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Links tagged with 'data display'

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ClustalXTool Content

http://www.clustal.org/clustal2/

Sequence Comparison > Multiple Sequence Alignments

Clustal X is a version of the Clustal W multiple sequence alignment program with a graphical interface. The display colours allow conserved features to be highlighted for easy viewing in the alignment. It is available for several platforms, including Windows, Macintosh PowerMac, Linux and Solaris.

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tagsalgorithms amino acid sequence animals data display humans molecular sequence data nucleic acid sequence homology nucleic acids phylogeny protein sequence analysis sequence alignment sequence analysis transcription factor tfiib transcription factors

ENDscriptTool Content

http://espript.ibcp.fr/ESPript/ENDscript/index.php

Protein > 2-D Structure Prediction
Protein > 3-D Structure Retrieval/Viewing
Sequence Comparison > Analysis of Aligned Sequences
Sequence Comparison > Multiple Sequence Alignments

ENDscript is a tool for creating, visualizing, and interpreting multiple sequence alignments overlayed with known structural information.

NAR Web Server Issue 2003
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tagsamino acid sequence amino acid sequence homology data display database management systems dna-binding proteins factual databases molecular models molecular sequence data molecular structure protein conformation protein databases protein sequence analysis proteins secondary protein structure sequence alignment tertiary protein structure transcription factors

iRefIndexDatabase Content

http://irefindex.uio.no/wiki/iRefIndex

Protein > Interactions, Pathways, Enzymes

iRefIndex provides an index of protein interactions available in a number of primary interaction databases including BIND, BioGRID, CORUM, DIP, HPRD, IntAct, MINT, MPact, MPPI and OPHID. This index allows the user to search for a protein and retrieve a non-redundant list of interactors for that protein.

This content is being maintained by ian.donaldson.

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tagsamino acid sequence analysis of variance animals computational biology data compression data display database management systems humans neural networks (computer) protein databases protein interaction domains and motifs protein interaction mapping protein isoforms proteins proteome proteomics

iTOLTool Content

http://itol.embl.de

Protein > Phylogeny Reconstruction

The Interactive Tree of Life (iTOL) tool is useful for the display, manipulation and annotation of phylogenetic trees. In addition to standart tree viewer functions, it offers powerful annotation of phylogenetic trees with various additional datasets. Annotated trees can be exported into various graphical formats. An user account system is provided, offering easy tree management and sharing through workspaces and projects. Programmatic access is also available.

This content is being maintained by iletunic.

NAR Web Server Issue 2011
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tagsalgorithms animals chromosome mapping computational biology data display decision trees genetic databases horizontal gene transfer humans molecular evolution molecular sequence annotation phylogeny species specificity visualization

massXpertTool Content

http://www.massxpert.org

Protein > Proteomics

massXpert is a proteomics-oriented program mainly concerned with protein physico-chemistry and protein/peptide mass spectra simulations.

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tagsdata display mass spectrometry protein conformation proteome

ProSAT2Tool Content

http://projects.villa-bosch.de/dbase/ps2/

Protein > 3-D Structural Features
Protein > 3-D Structure Retrieval/Viewing

Protein Structure Annotation Tool (ProSAT2) is a tool for the visualization of sequence based, residue-specific annotations mapped onto three-dimensional (3D) protein structures

NAR Web Server Issue 2006
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tagsamino acids chromosome mapping data display molecular structure mutation protein conformation protein databases proteins three-dimensional imaging

RNA MoviesTool Content

http://bibiserv.techfak.uni-bielefeld.de/rnamovies/

RNA > Structure Prediction, Visualization, and Design

RNA Movies is a tool for the visualization of RNA secondary structure spaces. The program creates an interpolated animation of user provided sets of secondary structure data.

NAR Web Server Issue 2007
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tagsalgorithms bacterial rna computational biology computer simulation data display multimedia natronobacterium nucleic acid conformation programming languages rna