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Links tagged with 'data collection'

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ArrayExpressDatabase Content

http://www.ebi.ac.uk/arrayexpress/

Expression > Transcript Expression Analysis

Public repository for microarray based gene expression data; contains several curated gene expression datasets.

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tagsalgorithms animals computational biology data collection database management systems europe gene expression profiling genetic databases information dissemination information systems oligonucleotide array sequence analysis proteins software design

EntrezDatabase Content

http://www.ncbi.nlm.nih.gov/Entrez/index.html

DNA > Sequence Retrieval and Submission
Protein > Sequence Data
Protein > Sequence Retrieval
RNA > Sequence Retrieval

NCBI information retrieval system, including GenBank, MMDB (structures), genomes, population sets, OMIM, taxonomy and PubMed.

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tagsanimals data collection dna sequence analysis expressed sequence tags genomics humans nucleic acid databases sequence tagged sites

MIAMExpressTool Content

http://www.ebi.ac.uk/microarray/MIAMExpress/miamexpress.html

Expression > Transcript Expression Analysis

MIAME (minimum information about a microarray experiment) compliant microarray data submission tool.

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tagsanimals computational biology data collection europe gene expression profiling genetic databases oligonucleotide array sequence analysis software design

MolMovDBDatabase Content

http://molmovdb.org/

Protein > 3-D Structure Retrieval/Viewing
RNA > Structure Prediction, Visualization, and Design

The Database of Macromolecular Movements (MolMovDB) contains a collection of animated protein and RNA structures to assist in the exploration of macromolecular flexibility. Software for structure analysis is also available.

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tagsdata collection genetic databases molecular models motion nucleic acid conformation protein conformation rna

RCSB Protein Data BankDatabase Content

http://www.pdb.org

Protein > 3-D Structure Retrieval/Viewing
Protein > Databases
Protein > Sequence Data

The PDB archive contains information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function.

NAR Database Issue 2011
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tagsanimals data collection dictionaries as topic genomics humans ligands mice protein conformation protein databases proteins systems integration

WormBaseDatabase Content

http://www.wormbase.org/

Model Organisms > Worm

Repository of mapping, sequencing and phenotypic information about C. elegans and C. briggsae.

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tagsanimals caenorhabditis caenorhabditis elegans data collection expressed sequence tags gene expression genomics helminth dna helminth rna neurons nucleic acid databases nucleic acid sequence homology rna interference single nucleotide polymorphism