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Links tagged with 'cysteine endopeptidases'

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ALADYNTool Content

http://aladyn.escience-lab.org

Protein > 3-D Structural Features
Protein > 3-D Structure Comparison

The ALADYN web server aligns pairs of protein structures by comparing their internal dynamics and detecting regions that sustain similar large-scale movements. Input is the structure files of two proteins.

NAR Web Server Issue 2010
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tagsamyloid precursor protein secretases cysteine endopeptidases exodeoxyribonucleases hiv protease motion protein conformation protein structural homology proteins

KNOTSTool Content

http://knots.mit.edu/

Protein > 3-D Structural Features

KNOTS is a web server that detects knots in protein structures.

NAR Web Server Issue 2007
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tagsalgorithms bacterial proteins computational biology computer simulation cysteine endopeptidases genetic databases haemophilus influenzae humans molecular evolution molecular models protein binding protein conformation protein databases protein folding proteins statistical models tertiary protein structure

STRAPTool Content

http://www.bioinformatics.org/strap/

Protein > 3-D Structure Comparison
Sequence Comparison > Alignment Editing and Visualization
Sequence Comparison > Multiple Sequence Alignments

The Structural Alignment Program for Proteins (STRAP) is a java-based program that can be run over the web using a Java Web Start enabled browser or downloaded and run as a stand-alone application. Alignments can be done using one of several methods, including ClustalW, JAligner and T_coffee. STRAP is also able to incorporate structure information and interfaces with programs such as Pymol and Rasmol. There is also a tutorial included.

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tagscysteine endopeptidases factual databases molecular models multienzyme complexes proteasome endopeptidase complex protein databases protein sequence analysis proteins sequence alignment