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Links tagged with 'cysteine'

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ClanToxTool Content

http://www.clantox.cs.huji.ac.il

Sequence Comparison > Analysis of Aligned Sequences

ClanTox, a classifier of short animal toxins, predicts whether input sequences are toxin-like based on classification system training to known animal toxins. This dscovery prediction tool also outputs presence of signal peptide, the number of cysteine residues and the associated functional annotations.

NAR Web Server Issue 2009
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tagsanimals biological toxins cysteine protein sequence analysis proteomics

DBCPTool Content

http://120.107.8.16/dbcp

Protein > 3-D Structural Features
Protein > 3-D Structure Prediction

The Disulfide Bonding Connectivity Pattern (DBCP) web server tool provides prediction of disulphide bonding connectivity patterns without the prior knowledge of the bonding states of cysteines. Useful in locating disulphide bridges and helping to solve protein folding.

NAR Web Server Issue 2010
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tagscysteine disulfides protein conformation protein folding protein sequence analysis proteins reproducibility of results

DiANNATool Content

http://bioinformatics.bc.edu/clotelab/DiANNA/

Protein > Biochemical Features
Protein > Sequence Features

DiANNA (DiAminoacid Neural Network Application) a tool that predicts cysteine states of a protein. It can predict whether a particular cysteine is reduced, is forming a disulfide bond, or is bound to a metallic ligand.

NAR Web Server Issue 2005NAR Web Server Issue 2006
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tagsalgorithms artificial intelligence binding sites chemical models computer simulation cysteine disulfides neural networks (computer) oxidation-reduction protein binding protein conformation protein interaction mapping protein sequence analysis proteins secondary protein structure sequence alignment structure-activity relationship

DISULFINDTool Content

http://disulfind.dsi.unifi.it/

Protein > Biochemical Features
Protein > Sequence Features

DISULFIND is a server for predicting the disulfide bonding state of cysteines and their disulfide connectivity given a protein sequence.

This content is being maintained by paolo.frasconi.

NAR Web Server Issue 2006
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tagsalgorithms amino acid sequence artificial intelligence binding sites computational biology computer simulation cysteine disulfide bridges disulfides gene expression profiling histidine machine learning metalloproteins molecular evolution molecular sequence data neural networks (computer) protein binding protein databases protein sequence analysis proteins sequence alignment

GDAPTool Content

http://www.doe-mbi.ucla.edu/Services/GDAP

Protein > Biochemical Features
Protein > Sequence Features

The Genomic Disulfide Analysis Program (GDAP) predicts disulfide bonds for a user-supplied protein sequence. GDAP also provides access to pre-computed predictions of disulfide bonds for over 100 microbial genomes.

NAR Web Server Issue 2004
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tagsarchaeal genome archaeal proteins bacterial genome bacterial proteins cysteine disulfides protein sequence analysis statistical data interpretation

MetalDetectorTool Content

http://metaldetector.dsi.unifi.it/v2.0/

Other Molecules > Compounds
Protein > Sequence Features

MetalDetector identifies CYS and HIS involved in transition metal protein binding sites beginning with protein sequence alone. The geometry of the metal binding site is also predicted.

NAR Web Server Issue 2011
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tagsbinding sites cysteine histidine metalloproteins metals protein sequence analysis

SDPMODTool Content

http://proline.bic.nus.edu.sg/sdpmod/

Protein > 3-D Structure Prediction

SDPMOD is a comparative modelling tool for small disulfide-bonded proteins (SDPs).

NAR Web Server Issue 2004
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tagsconotoxins cysteine disulfides molecular models protein structural homology proteins reproducibility of results