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Links tagged with 'classification'

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AutoClass@IJMTool Content

http://www.ijm.fr/en/ijm/resources/bioinformatics/

Expression > Gene Set Analysis
Expression > Protein Expression
Expression > Transcript Expression Analysis
Human Genome > Genomics
Protein > Protein Expression

AutoClass is an unsupervised Bayesian classification system. AutoClass@IJM provides a web interface for this clustering algorithm.

NAR Web Server Issue 2009
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tagsalgorithms bayes theorem classification cluster analysis gene expression profiling oligonucleotide array sequence analysis

EnsemblDatabase Content

http://www.ensembl.org

DNA > Databases
Model Organisms > Databases

The Ensembl project provides high quality, integrated annotation on chordate and selected eukaryotic genomes within a consistent and accessible infrastructure. All supported species include comprehensive, evidence-based gene annotations and a selected set of genomes includes additional data focused on variation, comparative, evolutionary, functional and regulatory annotation. The most advanced resources are provided for key species including human, mouse, rat and zebrafish.

NAR Database Issue 2010NAR Database Issue 2011
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tagsanimals anopheles gambiae classification computational biology genetic databases genetic variation genome genomics humans mice molecular sequence annotation nucleic acid databases nucleic acid regulatory sequences open reading frames protein databases rats search engine single nucleotide polymorphism species specificity tertiary protein structure zebrafish

Ensembl GenomesDatabase Content

http://www.ensemblgenomes.org

Model Organisms > Databases

Ensembl Genomes is a new portal offering integrated access to genome-scale data from non-vertebrate species of scientific interest, developed using the Ensembl genome annotation and visualisation platform. Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. Data types incorporated include annotation of (protein and non-protein coding) genes, cross references to external resources, and high throughput experimental data (e.g. data from large scale studies of gene expression and polymorphism visualised in their genomic context). Additionally, extensive comparative analysis has been performed, both within defined clades and across the wider taxonomy, and sequence alignments and gene trees resulting from this can be accessed through the site.

NAR Database Issue 2010
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tagsanimals anopheles gambiae bacterial genome classification computational biology fungal genome gene expression genetic databases genetic polymorphism genome humans invertebrates nucleic acid databases open reading frames plant genome search engine single nucleotide polymorphism tertiary protein structure

Gene Expression Data AnalyzerTool Content

http://bioinformatics.upmc.edu/GE2/GEDA.html

Expression > Transcript Expression Analysis

The Gene Expression Data Analyzer (GEDA) is a tool for discovering differential gene expression in a subset of patients. It is tailored to cancer-related microarray studies and offers extensive options for visualization, classification and normalization.

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tagsacute disease algorithms artificial intelligence classification cluster analysis gene expression profiling genes human genome humans myeloid leukemia neoplastic gene expression regulation oligonucleotide array sequence analysis predictive value of tests reference standards treatment failure treatment outcome

NEWTDatabase Content

http://www.ebi.ac.uk/newt/display

DNA > Phylogeny Reconstruction
Model Organisms > General Resources
Protein > Phylogeny Reconstruction

NEWT is the taxonomy database maintained by the UniProt group.

NAR Web Server Issue 2003
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tagsclassification protein databases systems integration