>
Tag
> Links tagged with 'chromosomes'

Links tagged with 'chromosomes'

RSS FeedCompact ViewList as XMLList as JSON

Found 8 links

Displaying 8 links

BIOBASE Gene Regulation databasesDatabase Content

http://www.gene-regulation.com/pub/databases.html

Protein > Interactions, Pathways, Enzymes

includes: TRANSFAC - transcription factor database; Patho DB - mutated forms of transcription factors and binding sites that are pathologically relevant; S/MARt DB - scaffold matrix transaction database; TRANSPATH - gene regulatory pathway database.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsanimals binding sites chromatin chromosomes database management systems developmental gene expression regulation dna-binding proteins eukaryotic cells forecasting gene expression profiling gene expression regulation genetic databases genetic promoter regions genetic transcription humans macromolecular substances mice nuclear matrix nuclear proteins nucleic acid databases oligonucleotide array sequence analysis protein databases saccharomyces signal transduction systems integration tissue distribution transcription factors

ChimerDBDatabase Content

http://ercsb.ewha.ac.kr/fusiongene

DNA > Databases

ChimerDB is a knowledgebase of fusion genes identified from bioinformatics analysis of transcript sequences in the GenBank and various other public resources such as the Sanger cancer genome project (CGP), OMIM, PubMed and the Mitelman's database. A new algorithm that is more sensitive, has detected 2699 fusion transcripts with high confidence. Furthermore, it can identify interchromosomal translocations as well as the intrachromosomal deletions or inversions of large DNA segments. Results from the analysis of next-generation sequencing data in the short read archives are incorporated along with a new alignment viewer.

NAR Database Issue 2010
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms animals chromosomes computational biology gene expression profiling genetic databases genetic translocation humans nucleic acid databases protein databases pubmed

EMMADatabase Content

http://www.emmanet.org

Model Organisms > Databases

The European Mouse Mutant Archive (EMMA) is an infrastructure for archiving and worldwide provision of mouse mutant strains. It operates in collaboration with the other members of the Federation of International Mouse Resources (FIMRe), EMMA being the European component. The EMMA database gathers and curates extensive data on each line and presents it through a user-friendly website. A BioMart interface allows advanced searching including integrated querying with other resources e.g. Ensembl.

This content is being maintained by damiansmedley.

NAR Database Issue 2010
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsanimals chromosomes computational biology genetic databases genetic models inbred c57bl mice knockout mice mice nucleic acid databases protein databases tertiary protein structure

FeatureExtractTool Content

http://www.cbs.dtu.dk/services/FeatureExtract/

DNA > Annotations
DNA > Sequence Retrieval and Submission
Human Genome > Annotations
Protein > Sequence Retrieval
RNA > Sequence Retrieval

The FeatureExtract server extracts sequence and feature annotations, such as intron/exon structure, from GenBank entries and other GenBank format files.

NAR Web Server Issue 2005
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagschromosomes dna sequence analysis gene components humans nucleic acid databases

FGFTool Content

http://fgf.genomics.org.cn/service/index.jsp

Protein > Phylogeny Reconstruction
Sequence Comparison > Analysis of Aligned Sequences
Sequence Comparison > Multiple Sequence Alignments
Sequence Comparison > Similarity Searching

FGF (Fishing Gene Family) is a resource for finding gene families given a set of protein sequences by investigating phylogenetic trees, duplication fate, and selective pressure (ka/ks calculations).

NAR Web Server Issue 2007
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms animals chromosome mapping chromosomes computational biology gene duplication genetic models genome humans molecular evolution phylogeny

LowComplexityTool Content

http://wwwmgs.bionet.nsc.ru/mgs/programs/low_complexity/

DNA > Structure and Sequence Feature Detection
Protein > Sequence Features
Sequence Comparison > Analysis of Aligned Sequences

LowComplexity is a tool that searches for low complexity regions of DNA or protein sequences. Using LowComplexity you can search long sequences (chromosomes, genomes) or a set of aligned sequences. This resource also contains links to other algorithms for evaluating the complexity of sequences.

NAR Web Server Issue 2004
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms bacterial genome chromosomes dna sequence analysis sequence alignment

NGSmethDBDatabase Content

http://bioinfo2.ugr.es/NGSmethDB/gbrowse/

DNA > Databases

NGSmethDB contains methylation data derived from next-generation sequencing (NGS). Two cytosine methylation contexts (CpG and CAG/CTG) are considered. Through a browser interface, the user can search for methylation states in a set of tissues, retrieve methylation values for a set of tissues in a given chromosomal region, or display the methylation of promoters among different tissues. NGSmethDB is currently populated with human, mouse and Arabidopsis data.

NAR Database Issue 2011
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsanimals chromosomes cpg islands cytosine data mining dna methylation dna sequence analysis genetic promoter regions genomics humans mice nucleic acid databases

SPRINGTool Content

http://algorithm.cs.nthu.edu.tw/tools/SPRING

DNA > Phylogeny Reconstruction
Sequence Comparison > Comparative Genomics

Sorting Permutation by Reversals and Block Interchanges (SPRING) is a tool for the analysis of genome rearrangements. SPRING takes two or more chromosomes as its input and then computes a minimum series of reversals and/or block-interchanges for transforming one chromosome into another. Phylogenetic trees based on the rearrangement analysis are also shown as part of the results.

NAR Web Server Issue 2006
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms bacterial chromosomes bacterial genome chromosome inversion chromosome mapping chromosomes dna sequence analysis gammaproteobacteria gene order gene rearrangement genetic models genetic recombination genomics molecular evolution nucleic acid sequence homology phylogeny sequence alignment vibrio