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Links tagged with 'chemical dictionaries'

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ChEBIDatabase Content

http://www.ebi.ac.uk/chebi/

Other Molecules > Databases

Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds. The molecular entities in question are either natural products or synthetic products used to intervene in the processes of living organisms. In addition to molecular entities, ChEBI contains groups (parts of molecular entities) and classes of entities.

NAR Database Issue 2010
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tagsagrochemicals animals biological products chemical dictionaries computational biology controlled vocabulary factual databases humans pharmaceutical preparations
setsEuropean Bioinformatics Institute (EBI)

IBM Bioinformatics and Pattern Discovery GroupTool Content

http://cbcsrv.watson.ibm.com/Tspd.html

DNA > Annotations
DNA > Gene Prediction
DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Human Genome > Annotations
Protein > 2-D Structure Prediction
Protein > Annotation and Function
Protein > Biochemical Features
Protein > Domains and Motifs
RNA > Motifs
Sequence Comparison > Multiple Sequence Alignments

Extensive server possessing a wide range of tools for pattern discovery in DNA and protein sequences as well as in text. Tools for multiple sequence alignment, gene discovery, protein annotation, and other applications also exist on this server. A detailed help page is provided for all tools.

NAR Web Server Issue 2003NAR Web Server Issue 2004
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tagsalgorithms amino acid motifs amino acid sequence amino acid sequence homology animals anti-infective agents archaeal genes archaeal genome automated pattern recognition bacterial genes bacterial genome base sequence biomedical engineering chemical dictionaries computational biology conserved sequence dna dna sequence analysis eukaryotic cells evaluation studies as topic factual databases gene expression genetic databases genome genomics histones humans initiator codon leghemoglobin molecular models molecular sequence data open reading frames peptides probability protein databases protein sequence analysis proteins proteome rna sequence analysis secondary protein structure sequence alignment sequence analysis ubiquitin viral genome

PubChemDatabase Content

http://pubchem.ncbi.nlm.nih.gov/

Other Molecules > Databases

The PubChem BioAssay database is a public repository for biological activities of small molecules and small interfering RNAs (siRNAs). It archives experimental descriptions of assays and biological test results. A PubChem BioAssay data entry includes an assay description, a summary and detailed test results. Each assay record is linked to the molecular target, whenever possible, and is cross-referenced to other NCBI database records.

NAR Database Issue 2010
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tagsanimals biological assay chemical dictionaries computational biology factual databases humans national library of medicine (u.s.) pharmaceutical preparations pharmacology protein databases structure-activity relationship united states

UM-BBDDatabase Content

http://umbbd.msi.umn.edu/

Protein > Databases

The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on compounds, enzymes, reactions and microorganism entries. It includes a Biochemical Periodic Table (UM-BPT) and a rule-based Pathway Prediction System (UM-PPS) that predicts plausible pathways for microbial degradation of organic compounds. UM-BBD compound data are contributed to PubChem and ChemSpider, the public chemical databases.

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NAR Database Issue 2010
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tagsbacterial genome biochemistry biotransformation chemical dictionaries computational biology environmental biodegradation environmental pollutants genetic databases microbiology nucleic acid databases