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Links tagged with 'catalytic rna'

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CARNACTool Content

http://bioinfo.lifl.fr/carnac

RNA > Structure Prediction, Visualization, and Design

Server which predicts conserved secondary structure elements of homologous RNAs. The input of a set of RNA sequences are not required to be previously aligned.

NAR Web Server Issue 2004
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tagsalgorithms catalytic rna cytochromes endoribonucleases enterovirus genetic models messenger rna molecular sequence data nucleic acid conformation nucleic acid databases nucleic acid sequence homology ribonuclease p ribosomal rna rna rna sequence analysis sequence alignment statistical models telomerase viral rna

PfoldTool Content

http://www.daimi.au.dk/~compbio/pfold

RNA > Structure Prediction, Visualization, and Design

The Pfold server takes an alignment of RNA sequences as input and predicts a common secondary structure.

NAR Web Server Issue 2003
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tagsalgorithms bacterial rna base sequence biological evolution catalytic rna computational biology computer simulation endoribonucleases molecular evolution molecular models molecular sequence data nucleic acid conformation nucleic acid sequence homology probability reproducibility of results ribonuclease p rna rna sequence analysis sequence alignment stochastic processes time factors

RNA AnalyzerTool Content

http://rnaanalyzer.bioapps.biozentrum.uni-wuerzburg.de/

RNA > Motifs
RNA > Structure Prediction, Visualization, and Design

RNA Analyzer searches for known structures and identifies RNA motifs in your input sequence.

NAR Web Server Issue 2003
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tagscatalytic rna messenger rna nucleic acid conformation ribonucleic acid regulatory sequences rna sequence analysis

RNAfoldTool Content

http://www.tbi.univie.ac.at/cgi-bin/RNAfold.cgi

RNA > Structure Prediction, Visualization, and Design

Predict RNA secondary structure from sequence; note sequence length limit.

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tagsalgorithms alzheimer disease amyloid beta-protein precursor base composition base sequence catalytic rna codon humans molecular sequence data nucleic acid conformation thermodynamics

SfoldTool Content

http://sfold.wadsworth.org

DNA > Tools For the Bench
Expression > Gene Regulation
RNA > Structure Prediction, Visualization, and Design

Server with three tools for the rational design of small interfering RNAs (Sirna), antisense oligonucleotides (Soligo), and trans-cleaving ribozymes (Sribo). A fourth tool, Srna, returns output including general folding features.

NAR Web Server Issue 2004
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tagsalgorithms animals antisense oligonucleotides antisense rna base sequence bayes theorem binding sites catalytic rna computational biology drug design escherichia coli molecular sequence data nucleic acid conformation phylogeny probability protozoan rna rabbits ribosomal rna rna rna stability small interfering rna spliced leader rna statistical distributions statistical models tetrahymena thermophila thermodynamics transfer rna xenopus laevis