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Links tagged with 'caenorhabditis elegans proteins'

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Interolog/Regulog DatabaseDatabase Content

http://interolog.gersteinlab.org/

Model Organisms > Fly
Model Organisms > Plants
Model Organisms > Worm
Model Organisms > Yeast
Protein > Interactions, Pathways, Enzymes

Database of protein orthologs that interact (interologs) and proteins with conserved regulatory relationships across species (regulogs). Contains data for C. elegans, Drosophila, Arabidopsis, and Yeast.

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tagsamino acid sequence amino acid sequence homology animals bacterial dna bacterial genome bacterial proteins binding sites caenorhabditis elegans caenorhabditis elegans proteins computational biology conserved sequence dna dna-binding proteins drosophila melanogaster drosophila proteins fungal dna fungal genome genome helicobacter pylori helminth dna protein binding protein databases protein interaction mapping proteins saccharomyces cerevisiae saccharomyces cerevisiae proteins

PhyloDomeTool Content

http://mendel.imp.univie.ac.at/PhyloDome/

Protein > Domains and Motifs
Protein > Phylogeny Reconstruction

PhyloDome is a tool with which you can visualize and analyze the phylogenetic distribution of one or more eukaryotic domains.

NAR Web Server Issue 2005
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tagsanimals caenorhabditis elegans caenorhabditis elegans proteins drosophila proteins eukaryotic cells phylogeny protein sequence analysis proteins signal transduction tertiary protein structure

PPISearchTool Content

http://gemdock.life.nctu.edu.tw/ppisearch/

Protein > Interactions, Pathways, Enzymes
Protein > Phylogeny Reconstruction
Protein > Sequence Comparison
Sequence Comparison > Similarity Searching

PPISearch is a web server for identification of homologous protein-protein interactions (PPIs), inferring transferability of interacting domains and functions of a query protein pair. Homology is searched across multiple species.

NAR Web Server Issue 2009
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tagsadaptor protein complex 1 amino acid sequence homology animals caenorhabditis elegans proteins mice protein databases protein interaction domains and motifs protein interaction mapping

RBPDBDatabase Content

http://rbpdb.ccbr.utoronto.ca/

RNA > Databases

The RNA-Binding Protein DataBase (RBPDB) is a collection of experimental observations of RNA-binding sites, both in vitro and in vivo, manually curated from primary literature. The database is accessible by a web interface which allows browsing by domain or by organism, searching and export of records, and bulk data downloads. Users can also use RBPDB to scan sequences for RBP-binding sites.

NAR Database Issue 2011
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tagsanimals binding sites caenorhabditis elegans proteins drosophila proteins humans messenger rna mice protein databases rna sequence analysis rna-binding proteins tertiary protein structure
setsUniversity of Toronto

RNAhybridTool Content

http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/

Expression > Gene Regulation
RNA > Functional RNAs

RNAhybrid is a tool for predicting miRNA (microRNA) targets by calculating the minimum free energy of hybridization between target RNA and miRNA sequences.

NAR Web Server Issue 2006
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tags3' untranslated regions algorithms animals binding sites body patterning caenorhabditis elegans caenorhabditis elegans proteins computational biology drosophila homeodomain proteins insect genes messenger rna micrornas nucleic acid conformation nucleic acid databases post-transcriptional rna processing rna interference thermodynamics