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Links tagged with 'biology'

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Displaying 9 links

BioBIKETool Content

http://www.Biobike.org

Computer Related > Web Services

BioBIKE is a web-based environment enabling biologists with little programming expertise to combine tools, data and knowledge in novel and complex ways. BioBIKE is composed of three components: a biological knowledge base, a graphical programming interface and an extensible set of tools. Users may also invent their own tools.

NAR Web Server Issue 2009
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tagsbiology genetic databases systems integration

BioMartTool Content

http://biomart.org

DNA > Sequence Retrieval and Submission
DNA > Structure and Sequence Feature Detection
Protein > Interactions, Pathways, Enzymes
Protein > Sequence Retrieval
RNA > Databases

BioMart is an interactive data integration system facilitating large-scale data queries. It can be installed and used in-house, or with one of the existing data sources to which is has already been applied (ie. UniProt, Ensembl).

NAR Web Server Issue 2009
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tagsbiology genetic databases
setsOntario Institute for Cancer Research (OICR)

CARGOTool Content

http://cargo2.bioinfo.cnio.es/docs/aboutCargo.html

DNA > Annotations
DNA > Sequence Polymorphisms
Human Genome > Annotations
Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms
Literature > Text Mining and Semantics
Protein > Interactions, Pathways, Enzymes

CARGO (Cancer And Related Genes Online) is a portal that uses widgets to allow users to mine literature using iHOP, retrieve disease information from OMIM, visualize 3D SNPs, query protein interactions, and view summarized gene annotation information for cancer related genes in human.

NAR Web Server Issue 2007
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tagsanimals biology computational biology database management systems factual databases genetic databases humans programming languages systems integration

ChilibotTool Content

http://www.chilibot.net/

Literature > Text Mining and Semantics

Chilibot searches the PubMed literature database based on specific relationships between proteins, genes, or keywords. The results are returned as a graph.

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tagsbiology information services natural language processing protein binding protein databases pubmed software design

HMS-ICSTool Content

http://biodb.jp/

Computer Related > Databases

The Hyperlink Management System (HMS) automatically updates and maintains hyperlinks among major databases using various data IDs (e.g. HUGO Gene Symbols, IDs from PDB, UniProt). The ID Converter System (ICS) supports the conversion of data IDs using the corresponding tables in HMS.

NAR Web Server Issue 2009
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tagsbiology database management systems genetic databases humans systems integration

iHOPTool Content

http://www.ihop-net.org/UniPub/iHOP/

Literature > Text Mining and Semantics
Protein > Interactions, Pathways, Enzymes

iHOP (Information Hyperlinked over Proteins) allows researchers to explore a network of gene and protein interactions based on published scientific literature. For each gene search, iHOP reports sentences from abstracts associating it with other genes, links out to full abstracts, and reports experimental evidence for the interactions, if available. You can also select sentences to create and visualize your own gene model.

NAR Web Server Issue 2007
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tagsanimals arabidopsis biology biomedical engineering caenorhabditis elegans computational biology database management systems drosophila melanogaster escherichia coli genes humans mice natural language processing periodicals as topic publications pubmed signal transduction software design zebrafish

NCBI Taxonomy DatabaseDatabase Content

http://www.ncbi.nlm.nih.gov/Taxonomy

DNA > Phylogeny Reconstruction
Model Organisms > General Resources
Protein > Phylogeny Reconstruction

Taxonomic classification of all organisms with sequences in GenBank.

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tagsanimals biology dna expressed sequence tags factual databases gene expression genome human genome humans mice molecular models national library of medicine (u.s.) neoplasms phenotype sequence tagged sites united states

The European Bioinformatics Institute (EBI)Database Content

http://www.ebi.ac.uk

DNA > Databases
DNA > Sequence Retrieval and Submission
Education > Community
Education > Directories and Portals
Expression > Databases
Expression > Transcript Expression Analysis
Human Genome > Databases
Literature > Databases
Model Organisms > Databases
Other Molecules > Databases
Protein > 3-D Structure Retrieval/Viewing
Protein > Annotation and Function
Protein > Databases
Protein > Domains and Motifs
Protein > Sequence Retrieval
RNA > Databases
Sequence Comparison > Multiple Sequence Alignments
Sequence Comparison > Similarity Searching

The European Bioinformatics Institute (EMBL-EBI) provides access to a comprehensive, integrated set of biological data. Resources include information on genes, genomes, proteins, expression, literature, and molecular interactions as well as many other useful resources.

NAR Database Issue 2010NAR Web Server Issue 2004
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tagsalgorithms animals biology computational biology europe gene expression profiling genetic databases humans nucleic acid databases nucleic acids phylogeny protein databases proteins sequence analysis sequence homology
setsEuropean Bioinformatics Institute (EBI)

XML Central of DDBJTool Content

http://www.xml.nig.ac.jp/index.html

Computer Related > Web Services
Education > Directories and Portals

XML Central of the DNA Data Bank of Japan (DDBJ) provides SOAP (Simple Object Access Protocol) server and web services for various databases and bioinformatics programs.

NAR Web Server Issue 2003
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tagsbiology nucleic acid databases systems integration