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Links tagged with 'biological toxins'

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ClanToxTool Content

http://www.clantox.cs.huji.ac.il

Sequence Comparison > Analysis of Aligned Sequences

ClanTox, a classifier of short animal toxins, predicts whether input sequences are toxin-like based on classification system training to known animal toxins. This dscovery prediction tool also outputs presence of signal peptide, the number of cysteine residues and the associated functional annotations.

NAR Web Server Issue 2009
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tagsanimals biological toxins cysteine protein sequence analysis proteomics

T3DBDatabase Content

http://www.t3db.org

Other Molecules > Databases

The Toxin and Toxin-Target Database (T3DB) is a unique bioinformatics resource that compiles comprehensive information about common or ubiquitous toxins and their toxin-targets. Each T3DB record (ToxCard) contains over 80 data fields providing detailed information on chemical properties and descriptors, toxicity values, protein and gene sequences (for both targets and toxins), molecular and cellular interaction data, toxicological data, mechanistic information and references. This information has been manually extracted and manually verified from numerous sources, including other electronic databases, government documents, textbooks and scientific journals. A key focus of the T3DB is on providing 'depth' over 'breadth' with detailed descriptions, mechanisms of action, and information on toxins and toxin-targets. Potential applications of the T3DB include clinical metabolomics, toxin target prediction, toxicity prediction and toxicology education.

NAR Database Issue 2010
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tagsbiological toxins computational biology drug design drug toxicity factual databases humans pharmaceutical preparations pharmacology protein databases reproducibility of results

TADBDatabase Content

http://bioinfo-mml.sjtu.edu.cn/TADB/

Other Molecules > Databases

TADB is an integrated database that provides comprehensive information about Type 2 toxin-antitoxin (TA) loci. TADB offers both predicted and experimentally supported Type 2 TA loci-relevant data. A broad range of similarity search, sequence alignment, genome context browser and phylogenetic tools are readily accessible via TADB.

NAR Database Issue 2011
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tagsarchaea archaeal genome archaeal proteins bacteria bacterial genome bacterial proteins bacterial toxins biological toxins genetic databases genetic loci