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Links tagged with 'bibliographic databases'

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ACELATool Content

http://www.nactem.ac.uk/acela/

Literature > Text Mining and Semantics

The ACELA (ACcElerated Annotation) tool aims to reduce the human effort required to produce a gold standard corpus of named entity (NE) annotations.

This content is being maintained by pthompson.

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tagsaccelerated annotation algorithms annotation tool artificial intelligence automated pattern recognition bibliographic databases named entity annotation natural language processing terminology as topic text mining
setsUniversity of Manchester

AcromineTool Content

http://www.nactem.ac.uk/software/acromine/

Literature > Text Mining and Semantics

Acromine is an tool that finds full forms of acronyms that appear in MEDLINE.

This content is being maintained by pthompson.

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tagsalgorithms automatic acronym expansion bibliographic databases cluster analysis computational biology dictionaries as topic medline natural language processing polymerase chain reaction reproducibility of results statistical models x-ray computed tomography
setsUniversity of Manchester

Acromine DisambiguatorTool Content

http://www.nactem.ac.uk/software/acromine_disambiguation/

Literature > Text Mining and Semantics

Given a biomedical text, Acromine Disambiguator correctly predicts expanded full forms of acronoyms appearing in the text. As acronyms appearing in biomedical texts are often ambiguous, such a disambiguation process is important to ensure the correct interpretation of the text.

This content is being maintained by pthompson.

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tagsalgorithms automatic acronym disambiguation automatic acronym expansion bibliographic databases cluster analysis computational biology dictionaries as topic medline natural language processing polymerase chain reaction reproducibility of results statistical models x-ray computed tomography
setsUniversity of Manchester

EBI ToolsTool Content

http://www.ebi.ac.uk/Tools/webservices/

Computer Related > Web Services
DNA > Sequence Retrieval and Submission
Education > Directories and Portals
Literature > Search Tools
Protein > 3-D Structure Comparison
Protein > Domains and Motifs
Protein > Sequence Retrieval
RNA > Sequence Retrieval
Sequence Comparison > Multiple Sequence Alignments
Sequence Comparison > Similarity Searching

EBI Tools is a project that aims to provide programmatic access to the various databases and retrieval and analysis services that the European Bioinformatics Institute (EBI) provides through Simple Object Access Protocol (SOAP) and other related web service technologies.

NAR Web Server Issue 2005NAR Web Server Issue 2007NAR Web Server Issue 2009
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tagsbibliographic databases biotechnology computational biology europe genetic databases nucleic acids protein sequence analysis proteins sequence alignment sequence analysis sequence homology systems integration

eTBLASTDatabase Content

http://etest.vbi.vt.edu/etblast3/

Literature > Search Tools

eTBLAST is a textual similarity search engine. This server can parse and summarize the results of an abstract similarity search to find appropriate journals for publication, authors with expertise in a given field, and documents similar to a submitted query.

NAR Web Server Issue 2007
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tagsalgorithms artificial intelligence authorship automated pattern recognition bibliographic databases controlled vocabulary database management systems humans informatics medline natural language processing peer review periodicals as topic publications publishing pubmed software design

PIR - Protein Information ResourceResource Content

http://pir.georgetown.edu/

Protein > Sequence Data

PIR is an integrated bioinformatics resource. The Protein Sequence Database (PSD), a functionally annotated database of protein sequences, is located at PIR.

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tagsamino acid sequence animals bibliographic databases computational biology human genome humans protein databases proteins

Protein Dipole ServerTool Content

http://bioportal.weizmann.ac.il/dipol/

Protein > 3-D Structural Features
Protein > Biochemical Features

The Protein Dipole server calculates and displays the net charge, dipole moment and mean radius of any 3-dimensional protein structure.

This content is being maintained by Clifford Felder.

NAR Web Server Issue 2007
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tagsbibliographic databases biophysics computational biology computer simulation enzymes fungal proteins mathematics molecular models protein conformation protein databases proteins secondary protein structure statistical models

PubGeneTool Content

http://www.pubgene.org/

Expression > Gene Regulation
Literature > Text Mining and Semantics

Searchable literature network of human genes with tools for gene expression analysis. Choose from the free public service, or purchase the commercial package.

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tagsbibliographic databases database management systems evaluation studies as topic factual databases gene expression profiling gene expression regulation genetic models human genome humans medline oligonucleotide array sequence analysis

SGDDatabase Content

http://genome-www.stanford.edu/Saccharomyces/

Model Organisms > Yeast

The Saccharomyces Genome Database.

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tagsamino acid motifs amino acid sequence amino acid sequence homology animals base sequence bibliographic databases computational biology factual databases fungal genes fungal genome fungal proteins genetic databases humans molecular models molecular sequence data molecular weight nucleic acid sequence homology protein conformation protein databases saccharomyces cerevisiae saccharomyces cerevisiae proteins saccharomycetales sequence alignment sequence homology terminology as topic