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Links tagged with 'base pairing'

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Found 10 links

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CURVES+Tool Content

http://gbio-pbil.ibcp.fr/cgi/Curves_plus/

DNA > Structure and Sequence Feature Detection

Curves+ is a web server for the analysis and visualization of the helical backbone and groove parameters of nucleic acid structures.

This content is being maintained by arel.

NAR Web Server Issue 2011
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tagsalgorithms base pairing nucleic acid conformation

DIALTool Content

http://bioinformatics.bc.edu/clotelab/DIAL/

RNA > Motifs
RNA > Structure Prediction, Visualization, and Design

DIAL (dihedral alignment) is a server that provides access to a dynamic programming algorithm for structural alignment of RNA.

NAR Web Server Issue 2007
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tagsalgorithms base pairing computational biology nucleic acid conformation programming languages protein databases rna rna sequence analysis sequence alignment statistical models

ILMTool Content

http://cic.cs.wustl.edu/RNA/

RNA > Structure Prediction, Visualization, and Design

Server which provides iterated loop matching and maximum weighted matching algorithms for pseudoknot containing RNA secondary structure prediction. Algorithms can apply thermodynamic and comparative information, and thus can be used for either aligned or individual sequences.

NAR Web Server Issue 2004
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tagsalgorithms bacillus subtilis bacterial rna base composition base pairing base sequence escherichia coli feedback molecular models molecular sequence data nucleic acid conformation nucleic acid sequence homology phylogeny reproducibility of results rna rna sequence analysis sensitivity and specificity sequence alignment theoretical models thermodynamics transfer rna

K2NTool Content

http://www.ibi.vu.nl/programs/k2nwww/

RNA > Structure Prediction, Visualization, and Design

K2N is a web service to get from knotted to nested RNA structures. This site provides access to a variety of methods for pseudoknot removal.

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tagsalgorithms base pairing base sequence computer simulation molecular models nucleic acid conformation rna

MicroInspectorTool Content

http://bioinfo.uni-plovdiv.bg/microinspector/

Expression > Gene Regulation
RNA > Functional RNAs
RNA > Motifs

MicroInspector is a tool that detects miRNA (microRNA) binding sites in your input sequence by searching against databases of known miRNA binding sites.

NAR Web Server Issue 2005
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tagsbase pairing binding sites messenger rna micrornas rna sequence analysis

NDB ToolsTool Content

http://ndbserver.rutgers.edu/services/

RNA > Motifs
RNA > Structure Prediction, Visualization, and Design

The Nucleic Acid Database (NDB) Tools page includes RNAView and BPView, programs for the visualization and classification of RNA base pairs, motifs, and structures.

NAR Web Server Issue 2003
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tagsalgorithms base pairing base sequence chemical models dna factual databases molecular models molecular sequence data nucleic acid conformation nucleic acid databases nucleic acid sequence homology proteins restriction mapping ribosomal rna rna signal recognition particle statistical data interpretation stereoisomerism terminology as topic water

PSEUDOVIEWERTool Content

http://pseudoviewer.inha.ac.kr/

RNA > Structure Prediction, Visualization, and Design

PSEUDOVIEWER is a tool for visualizing RNA pseudoknot structures.

This content is being maintained by khan.

NAR Web Server Issue 2003NAR Web Server Issue 2006
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tagsalgorithms base pairing base sequence computational biology molecular models molecular sequence data nucleic acid conformation programming languages rna rna sequence analysis

SCORDatabase Content

http://scor.berkeley.edu/

RNA > Functional RNAs
RNA > General Resources
RNA > Motifs

The Structural Classification of RNA (SCOR) is a database designed to provide a comprehensive perspective and understanding of RNA motif structure, function, tertiary interactions and their relationships.

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tagsanimals base pairing biomolecular nuclear magnetic resonance computational biology conserved sequence forecasting humans nucleic acid conformation nucleic acid databases rna structure-activity relationship x-ray crystallography

snoscanTool Content

http://lowelab.ucsc.edu/snoscan/

RNA > Functional RNAs

Snoscan allows you to search for C/D box methylation guide snoRNA (small nucleolar RNA) genes in a genomic sequence

NAR Web Server Issue 2005
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tagsalgorithms base pairing cell nucleolus fungal rna genetic models methylation ribose ribosomal rna saccharomyces cerevisiae small nuclear rna statistical models

TargetRNATool Content

http://snowwhite.wellesley.edu/targetRNA

Model Organisms > Microbes
RNA > Functional RNAs

TargetRNA is a web based tool for identifying mRNA targets of small non-coding RNAs in bacterial species.

NAR Web Server Issue 2008
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tagsalgorithms bacterial rna base pairing genomics messenger rna rna sequence analysis untranslated rna