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Links tagged with 'bacterial chromosomes'

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BASysTool Content

http://basys.ca

DNA > Annotations
Model Organisms > Microbes

BASys (Bacterial Annotation System) is a tool for automated annotation of bacterial genomic (chromosomal and plasmid) sequences including gene/protein names, GO functions, COG functions, possible paralogues and orthologues, molecular weights, isoelectric points, operon structures, subcellular localization, signal peptides, transmembrane regions, secondary structures, 3-D structures, reactions, and pathways.

This content is being maintained by gary.vandomselaar@gmail.com.

NAR Web Server Issue 2005
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tagsbacterial chromosomes bacterial genome genomics plasmids

CAP3 Sequence Assembly ProgramTool Content

http://bioweb.pasteur.fr/seqanal/interfaces/cap3.html

DNA > Mapping and Assembly

Web-based contig assembly.

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tagsalgorithms bacterial chromosomes consensus sequence contig mapping dna sequence analysis factual databases genetic models reproducibility of results sequence alignment theoretical models

Microbe BrowserTool Content

http://microbe.vital-it.ch

Model Organisms > Microbes

The Microbe Browser is a web server providing comparative microbial genomics data integrated from GenBank, RefSeq, UniProt, InterPro, Gene Ontology and the Orthologs Matrix Project (OMA) databases. Gene predictions based on 5 software packages is also displayed.

NAR Web Server Issue 2009
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tagsarchaeal genome bacterial chromosomes bacterial genome genomics

Phydbac2Tool Content

http://igs-server.cnrs-mrs.fr/phydbac/

Model Organisms > Microbes
Protein > Annotation and Function
Protein > Phylogeny Reconstruction
Sequence Comparison > Analysis of Aligned Sequences
Sequence Comparison > Comparative Genomics

Phydbac2 (Phylogenomic display of bacterial genes) is a tool to visualize and explore the phylogenomic profiles of bacterial protein sequences. It also allows the user to view sequence similarity across different organisms, access other genes with similar conservation profiles, and view genes that are found nearby a selected gene in multiple genomes.

NAR Web Server Issue 2004NAR Web Server Issue 2003
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tagsartificial gene fusion bacterial chromosomes bacterial genes bacterial genome bacterial proteins chromosome mapping escherichia coli proteins genomics molecular evolution open reading frames phylogeny protein sequence analysis

SPRINGTool Content

http://algorithm.cs.nthu.edu.tw/tools/SPRING

DNA > Phylogeny Reconstruction
Sequence Comparison > Comparative Genomics

Sorting Permutation by Reversals and Block Interchanges (SPRING) is a tool for the analysis of genome rearrangements. SPRING takes two or more chromosomes as its input and then computes a minimum series of reversals and/or block-interchanges for transforming one chromosome into another. Phylogenetic trees based on the rearrangement analysis are also shown as part of the results.

NAR Web Server Issue 2006
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tagsalgorithms bacterial chromosomes bacterial genome chromosome inversion chromosome mapping chromosomes dna sequence analysis gammaproteobacteria gene order gene rearrangement genetic models genetic recombination genomics molecular evolution nucleic acid sequence homology phylogeny sequence alignment vibrio