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Links tagged with 'antisense rna'

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AntiHunter 2.0Tool Content

http://bio.ifom-ieo-campus.it/antihunter

Expression > Gene Regulation
Expression > cDNA, EST, SAGE

AnitHunter 2.0 is a tool to detect potential EST antisense transcripts within a given genomic region from the analysis of BLAST output.

NAR Web Server Issue 2005
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tagsalgorithms antisense rna dna sequence analysis expressed sequence tags genetic databases sequence alignment time factors

PETfold & PETcofoldTool Content

http://rth.dk/resources/petfold/

RNA > Structure Prediction, Visualization, and Design

The PETfold and PETcofold web servers for the analysis of multiple RNA sequences for common RNA structure and for RNA-RNA interaction sites. Analysis is based on probablistic evolutionary an thermodynamic models.

NAR Web Server Issue 2011
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tags5' untranslated regions algorithms antisense rna humans micrornas nucleic acid conformation rna rna sequence analysis sequence alignment

SfoldTool Content

http://sfold.wadsworth.org

DNA > Tools For the Bench
Expression > Gene Regulation
RNA > Structure Prediction, Visualization, and Design

Server with three tools for the rational design of small interfering RNAs (Sirna), antisense oligonucleotides (Soligo), and trans-cleaving ribozymes (Sribo). A fourth tool, Srna, returns output including general folding features.

NAR Web Server Issue 2004
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tagsalgorithms animals antisense oligonucleotides antisense rna base sequence bayes theorem binding sites catalytic rna computational biology drug design escherichia coli molecular sequence data nucleic acid conformation phylogeny probability protozoan rna rabbits ribosomal rna rna rna stability small interfering rna spliced leader rna statistical distributions statistical models tetrahymena thermophila thermodynamics transfer rna xenopus laevis

taveRNATool Content

http://compbio.cs.sfu.ca/taverna/

RNA > Functional RNAs
RNA > Structure Prediction, Visualization, and Design

taveRNA hosts three RNA web services: alteRNA, inteRNA and pRuNA. alteRNA is an alternative to many RNA folding methods. inteRNA predicts the joint secondary structure of two RNA sequences. pRuNA is an database pruning method which given a query RNA returns only a few ncRNAs as potential regulators.

NAR Web Server Issue 2007
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tagsadenosine triphosphatases algorithms antisense rna bacterial genome bacterial rna base sequence binding sites cation transport proteins chemical models computational biology computer simulation escherichia coli escherichia coli proteins humans molecular sequence data nucleic acid conformation plasmids programming languages rna rna sequence analysis rna stability sequence alignment statistical models trans-activators