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Links tagged with 'antigens'

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AntigenDBDatabase Content

http://www.imtech.res.in/raghava/antigendb/

Human Genome > Databases

AntigenDB contains 500 antigens to pathogenic species curated from the literature and other immunological resources. In AntigenDB, a database entry contains information regarding the sequence, structure, origin, etc. of an antigen with additional information such as B and T-cell epitopes, MHC binding, function, gene-expression and post translational modifications, where available. AntigenDB also provides links to major internal and external databases.

This content is being maintained by raghavagps.

NAR Database Issue 2010
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tagsantigens communicable diseases computational biology epitopes genetic databases humans immune system immunogenetics lymphocytes peptide mapping post-translational protein processing protein databases tertiary protein structure

ClusProTool Content

http://cluspro.bu.edu/login.php

Protein > Molecular Dynamics and Docking

ClusPro is a tool for automatically computing the docking of two protein structures supplied by the user (or as PDB IDs). The result set is a ranked list of putative complexes, ordered by clustering properties.

NAR Web Server Issue 2004
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tagsalgorithms antibodies antigens binding sites biological models chemical models cluster analysis computational biology discriminant analysis energy transfer enzyme inhibitors fourier analysis molecular dynamics simulation molecular models monte carlo method protein binding protein conformation protein interaction mapping protein multimerization proteins reproducibility of results sensitivity and specificity static electricity time factors

PcleavageTool Content

http://www.imtech.res.in/raghava/pcleavage/

Protein > Sequence Features

Pcleavage is a tool that uses a support vector machine to predict immunoproteasome and constitutive proteasome cleavage sites in antigenic sequences.

This content is being maintained by raghavagps.

NAR Web Server Issue 2005
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tagsantigens artificial intelligence histocompatibility antigens class i ligands proteasome endopeptidase complex protein sequence analysis proteins

ProtegenDatabase Content

http://www.violinet.org/protegen

Other Molecules > Databases

Protegen is a web-based database and analysis system that curates, stores and analyzes protective antigens. Protegen includes basic antigen information and experimental evidence curated from peer-reviewed articles. It also includes detailed gene/protein information (e.g. DNA and protein sequences, and COG classification). Different antigen features, such as protein weight and pI, and subcellular localizations of bacterial proteins are precomputed.

This content is being maintained by yongqunh.

NAR Database Issue 2011
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tagsantigens bacterial antigens molecular sequence annotation protein databases proteins protozoan antigens sequence alignment vaccines viral antigens