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Links tagged with 'animal models'

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COXPRESdbDatabase Content

http://coxpresdb.jp

Expression > Databases
Model Organisms > Databases

COXPRESdb (coexpressed gene database) represents the coexpression relationship for human and mouse. Upgrades include a new comparable coexpression measure, Mutual Rank, five other animal species, rat, chicken, zebrafish, fly and nematoda, and addition of different layers of omics data into the integrated network of genes.

NAR Database Issue 2011
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tagsanimal models animals gene expression gene expression profiling gene regulatory networks genetic databases humans mice protein interaction mapping rats

ENDEAVOURTool Content

http://www.esat.kuleuven.be/endeavour

Expression > Networks
Expression > Protein Expression
Expression > Transcript Expression Analysis
Expression > cDNA, EST, SAGE

ENDEAVOUR is a computational approach to prioritize candidate genes for further study. Users input training genes already known to be involved in the process under study and the candidate genes to prioritize. The web server supports multiple species and integrates multiple genomic data to generate the final prioritization. ENDEAVOUR has been benchmarked in silico and experimentally validated leading to the discovery of novel disease genes in several genetic diseases.

This content is being maintained by ltranche.

NAR Web Server Issue 2008
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tagsalgorithms animal models animals caenorhabditis elegans cell differentiation chromosome mapping computational biology drosophila melanogaster gene expression regulation genes genetic models genetic predisposition to disease humans mice rats roc curve sensitivity and specificity statistical models zebrafish

GénieTool Content

http://cbdm.mdc-berlin.de/tools/genie/

Literature > Text Mining and Semantics

Genie evaluates the literature attached to all genes in a genome and to their orthologs for a selected topic. Hundreds of species and millions of genes are supported. Running times range from a few seconds to a minute in most of the cases.

This content is being maintained by fontaine.

NAR Web Server Issue 2011
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tagsalgorithms animal models animals data mining gene expression profiling gene prioritization genes genomics heart humans medline mice orthology relationships text mining zebrafish

Mouse Genome Database (MGD)Database Content

http://www.informatics.jax.org/

Model Organisms > Databases

The Mouse Genome Database (MGD) is the community model organism database for the laboratory mouse and the source for phenotype and functional annotations of mouse genes. MGD includes a complete catalog of mouse genes and genome features with integrated access to genetic, genomic and phenotypic information. MGD contains standardized descriptions of mouse phenotypes, associations between mouse models and human genetic diseases, extensive integration of DNA and protein sequence data, normalized representation of genome and genome variant information. Major improvements to the Mouse Genome Database include comprehensive update of genetic maps, implementation of new classification terms for genome features, development of a recombinase (cre) portal and inclusion of all alleles generated by the International Knockout Mouse Consortium (IKMC).

NAR Database Issue 2010NAR Database Issue 2011
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tagsalgorithms alleles animal models animals chromosome mapping computational biology genetic databases genetic models genome genomics genotype integrases knockout mice mice mutant strains mice nucleic acid databases phenotype terminology as topic

Swiss-Prot and TrEMBLDatabase Content

http://us.expasy.org/sprot/

Protein > Sequence Data

Swiss-Prot is a curated database of protein sequences that are highly annotated and have a minimal level of redundancy. TrEMBL is a supplement to Swiss-Prot, containing computer-annotated translations of EMBL sequences.

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tagsanimal models animals archaeal proteins bacterial proteins humans plant proteins protein databases proteins proteome proteomics systems integration terminology as topic

UlyssesTool Content

http://www.cisreg.ca:8080/ulysses/

DNA > Annotations
Human Genome > Annotations
Protein > Interactions, Pathways, Enzymes

Ulysses is a system to annotate human genes based on gene interactions in model organisms. Data are transferred from amenable species like yeast, fly, and worm through homology, and functional gene annotation is facilitated through the framework of a large database. The system unites homology mapping through HomoloGene and the integrated database Atlas.

This content is being maintained by wyeth.

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tagsanimal models animals genetic databases humans protein interaction mapping species specificity

ZFINDatabase Content

http://zfin.org

Model Organisms > Databases

ZFIN, the Zebrafish Model Organism Database serves as the central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. ZFIN manually curates comprehensive data for zebrafish genes, phenotypes, genotypes, gene expression, antibodies, anatomical structures and publications. A wide-ranging collection of web-based search forms and tools facilitates access to integrated views of these data promoting analysis and scientific discovery. Data formats include text, images and graphical representations.

NAR Database Issue 2011
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tagsanimal models animals antibodies gene expression genetic databases genomics messenger rna phenotype zebrafish