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Links tagged with 'amino acid repetitive sequences'

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HHrepTool Content

http://toolkit.tuebingen.mpg.de/hhrep

Protein > 2-D Structure Prediction
Protein > Sequence Features
Sequence Comparison > Other Alignment Tools
Sequence Comparison > Similarity Searching

HHrep is a tool for the de novo identification of repeats in protein sequences based on the pairwise comparison of profile hidden Markov models (HMMs).

NAR Web Server Issue 2006
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tagsamino acid repetitive sequences markov chains protein folding protein sequence analysis sequence alignment

InterProDatabase Content

http://www.ebi.ac.uk/interpro/index.html

Protein > Domains and Motifs

Integrated database of commonly used signature databases (e.g. PROSITE, PRINTS, SMART, Pfam, ProDom); text- and sequence-based searches.

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tagsalgorithms amino acid repetitive sequences animals computational biology factual databases humans information services metabolic networks and pathways post-translational protein processing protein databases protein sequence analysis proteins search engine sequence alignment systems integration tertiary protein structure

PolyQDatabase Content

http://pxgrid.med.monash.edu.au/polyq

Human Genome > Databases
Protein > Databases

PolyQ database is a collection of sequences of all human proteins containing runs of seven or more glutamine residues and their annotated sequences with domain information. PolyQ can be interrogated such that the sequence context of polyglutamine repeats in disease and non-disease associated proteins can be investigated.

NAR Database Issue 2011
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tagsamino acid repetitive sequences disease humans peptides protein databases protein sequence analysis proteins tertiary protein structure

REPPERTool Content

http://protevo.eb.tuebingen.mpg.de/repper

Protein > Sequence Features

REPPER (REPeats and their PERiodicities) is a tool for detecting and analysing regions in protein sequences or sequence alignements that have short gapless repeats.

NAR Web Server Issue 2005
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tagsamino acid repetitive sequences bacterial adhesins protein sequence analysis proteins secondary protein structure sequence alignment

REPROTool Content

http://www.ibi.vu.nl/programs/reprowww/

DNA > Structure and Sequence Feature Detection

REPRO web server is able to recognise distant repeats in a single query sequence.

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tagsamino acid repetitive sequences factual databases proteins