Multiple Sequence Alignments

Resources for generating multiple sequence alignments from sets of sequences.

Found 62 links

Displaying 15 links

ALTERTool Content

http://sing.ei.uvigo.es/ALTER/

ALTER is a program-oriented web tool for the conversion between DNA and protein alignments.

This content is being maintained by lipido.

antiSMASHTool Content

http://antismash.secondarymetabolites.org

The antibiotic and Secondary Metabolite Analysis Shell (antiSMASH) is a resource for identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

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BLASTOTool Content

http://oxytricha.princeton.edu/BlastO/index.html

BLASTO (BLAST on Orthologous groups) is a modified BLAST tool for searching orthologous group data. It treats each orthologous group as a unit and outputs a ranked list of orthologous groups instead of single sequences.

CE-MCTool Content

http://bioinformatics.albany.edu/~cemc/

A multiple protein structure alignment server which creates an all-to-all pairwise alignment using a combinatorial extension program and then using Monte Carlo optimization methods conducts an iterative global optimization. Results are formatted using JOY.

CHAOS/DIALIGN WWW serverTool Content

http://dialign.gobics.de/chaos-dialign-submission

The CHAOS/DIALIGN WWW server is a multiple sequence alignment site which passes input sequences through CHAOS to create a list of local similarites. These similarities serve as anchor points, allowing DIALIGN to conduct global alignments faster. ABC can then be used for the interactive visualization of the alignment.

ChinookTool Content

http://www.bcgsc.bc.ca/chinook/

Chinook is a peer-to-peer (P2P) service for the discovery, use and assessment of bioinformatics programs. Chinook Online allows researchers to connect and run distributed bioinformatics programs using a web application.

ClustalXTool Content

http://www.clustal.org/clustal2/

Clustal X is a version of the Clustal W multiple sequence alignment program with a graphical interface. The display colours allow conserved features to be highlighted for easy viewing in the alignment. It is available for several platforms, including Windows, Macintosh PowerMac, Linux and Solaris.

DIALIGN-TXTool Content

http://dialign-tx.gobics.de/

DIALIGN-TX is an update to DIALIGN. It combines the greedy heuristic method of DIALIGN with a traditional progressive method.

Tags associated with subcategory 'Sequence Comparison/Multiple Sequence Alignments'

sequence alignment protein sequence analysis algorithms computational biology animals humans proteins molecular sequence data amino acid sequence amino acid sequence homology protein databases dna sequence analysis phylogeny genome conserved sequence genetic databases genomics base sequence eukaryotic cells systems integration probability software validation chemical dictionaries ubiquitin proteome tertiary protein structure peptides biomedical engineering molecular models stem cells leghemoglobin initiator codon gene expression open reading frames tetraodontiformes histones archaeal genome bacterial genome proteasome endopeptidase complex bacterial dna mycobacterium leprae dna-binding proteins mycobacterium tuberculosis intergenic dna protein folding discriminant analysis flavodoxin hiv integrase neural networks (computer) membrane proteins fishes gata3 transcription factor anti-infective agents archaeal genes computer simulation bacterial genes automated pattern recognition statistical models src homology domains trans-activators artificial intelligence bayes theorem markov chains likelihood functions protein conformation consensus sequence swine takifugu time factors untranslated regions single nucleotide polymorphism sensitivity and specificity papio rabbits rats reproducibility of results viral genome sequence homology nucleic acid sequence homology nucleic acids sequence analysis transcription factor tfiib zebrafish software design aspartic acid endopeptidases factual databases monte carlo method secondary protein structure protein kinases pan troglodytes nucleic acid repetitive sequences rna sequence analysis binding sites cats cattle protein-serine-threonine kinases database management systems evaluation studies as topic fibronectins genes messenger rna