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General Resources

A collection of links to various RNA resource hubs in addition to RNA-related technical resources and databases.

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Found 10 links

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Ambion Inc. Technical ResourcesResource Content

http://www.ambion.com/techlib/

RNA > General Resources

Company web site with very good technical resources including an excellent links page, summaries of recent papers on RNA-related topics, and free access to review articles and web features on RNA-related research topics.

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Freiburg RNA ToolsTool Content

http://rna.informatik.uni-freiburg.de

RNA > Functional RNAs
RNA > General Resources
RNA > Motifs
Sequence Comparison > Multiple Sequence Alignments

The Freiburg RNA Tools web server contains tools for the advanced analysis of RNA. The tools IntaRNA, ExpaRNA and LocARNA support the prediction of RNA-RNA interaction, exact RNA matching and alignment of RNA, respectively.

NAR Web Server Issue 2010
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tagsmessenger rna nucleic acid conformation rna rna sequence analysis sequence alignment systems integration untranslated rna

NASTTool Content

http://greengenes.lbl.gov/cgi-bin/nph-NAST_align.cgi

DNA > Phylogeny Reconstruction
Model Organisms > Microbes
RNA > General Resources
Sequence Comparison > Multiple Sequence Alignments

Nearest Alignment Space Termination (NAST) is a multiple sequence alignment server for comparative analysis of 16S rRNA gene sequences from bacteria and archaea.

NAR Web Server Issue 2006
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tagsalgorithms archaeal genes bacillus anthracis bacterial genes cluster analysis computer-aided design dna probes dna sequence analysis equipment design gene expression profiling nucleic acid sequence homology oligonucleotide array sequence analysis ribosomal rna rrna genes sequence alignment staphylococcus aureus

NDBDatabase Content

http://ndbserver.rutgers.edu/

DNA > DNA and Genomic Analysis
RNA > General Resources

NDB (Nucleic Acid Database) is a repository of three-dimensional structural information about nucleic acids.

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tagsbase sequence dna factual databases molecular sequence data nucleic acid conformation nucleic acid sequence homology proteins restriction mapping rna

RNA folding ServersResource Content

http://kinefold.u-strasbg.fr/rna.html

RNA > General Resources

List of RNA folding servers and related web sites maintained by Herve Isambert.

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RNA Informatics LinksResource Content

http://www-lbit.iro.umontreal.ca/RNA_Links/RNA.shtml

RNA > General Resources

An exhaustive list of RNA links; from the experts in the Major lab.

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RNA StudioTool Content

http://bibiserv.techfak.uni-bielefeld.de/bibi/Tools_RNA_Studio.html

RNA > General Resources
RNA > Structure Prediction, Visualization, and Design

RNA Studio contains software for RNA analyses including tools for structure prediction, comparison, and visualization.

NAR Web Server Issue 2003
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tagsbase sequence computational biology nucleic acid conformation rna

SCORDatabase Content

http://scor.berkeley.edu/

RNA > Functional RNAs
RNA > General Resources
RNA > Motifs

The Structural Classification of RNA (SCOR) is a database designed to provide a comprehensive perspective and understanding of RNA motif structure, function, tertiary interactions and their relationships.

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tagsanimals base pairing biomolecular nuclear magnetic resonance computational biology conserved sequence forecasting humans nucleic acid conformation nucleic acid databases rna structure-activity relationship x-ray crystallography

The RNA WorldResource Content

http://www.imb-jena.de/RNA.html

RNA > General Resources

An RNA resource hub.

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The Zuker GroupResource Content

http://www.bioinfo.rpi.edu/applications/mfold/

RNA > General Resources

Algorithms, thermodynamics and databases for RNA secondary structure.

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Tags associated with subcategory 'RNA/General Resources'

rna nucleic acid conformation computational biology nucleic acid sequence homology nucleic acid databases base sequence sequence alignment cluster analysis bacillus anthracis bacterial genes archaeal genes computer-aided design dna sequence analysis dna probes rrna genes staphylococcus aureus ribosomal rna oligonucleotide array sequence analysis algorithms equipment design gene expression profiling structure-activity relationship x-ray crystallography untranslated rna dna systems integration rna sequence analysis animals base pairing messenger rna factual databases molecular sequence data forecasting humans conserved sequence biomolecular nuclear magnetic resonance proteins restriction mapping molecular models