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Protein Expression

This section contains links to protein expression data and resources for analysis of data including 2D gels.

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Found 10 links

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AutoClass@IJMTool Content

http://www.ijm.fr/en/ijm/resources/bioinformatics/

Expression > Gene Set Analysis
Expression > Protein Expression
Expression > Transcript Expression Analysis
Human Genome > Genomics
Protein > Protein Expression

AutoClass is an unsupervised Bayesian classification system. AutoClass@IJM provides a web interface for this clustering algorithm.

NAR Web Server Issue 2009
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tagsalgorithms bayes theorem classification cluster analysis gene expression profiling oligonucleotide array sequence analysis

ExPASy 2-D PAGE databases and servicesResource Content

http://us.expasy.org/ch2d/2d-index.html

Expression > Protein Expression
Protein > Protein Expression

References to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services.

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tagsautomatic data processing factual databases gel electrophoresis humans proteins publishing reproducibility of results

GELBANKDatabase Content

http://gelbank.anl.gov/

Expression > Protein Expression
Protein > Protein Expression
Protein > Proteomics

GELBANK is a database of 2D gel images of proteomes for species with completed genomes. The user can search by sequence description or fragment, or by gel characteristics. Links are made between the sequence and gel when available.

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tagsfactual databases gel electrophoresis genome humans hydrogen-ion concentration molecular weight proteome proteomics research design

GelScape and GelBankTool Content

http://www.gelscape.ualberta.ca/

Expression > Protein Expression
Protein > Protein Expression

GelScape is a platform-independent 1D and 2D gel analysis system that is freely available. Features include the ability to mark spots, to measure spot intensities and to archive gel images and annotations to the public database GelBank. Includes searchable access to GelBank\'s repository.

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tagsdatabase management systems documentation factual databases gel electrophoresis online systems polyacrylamide gel electrophoresis

GeneExpress2.1Tool Content

http://wwwmgs.bionet.nsc.ru/mgs/gnw/

Expression > Protein Expression
Protein > Interactions, Pathways, Enzymes
Protein > Protein Expression

Integrated system for data analysis with information about expression and gene networks, also contains transcriptional regulatory regions database (TRRD).

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tagsdatabase management systems gene expression programming languages systems integration

JVirGelTool Content

http://www.jvirgel.de/

Expression > Protein Expression
Model Organisms > Microbes
Protein > Protein Expression
Protein > Proteomics

JVirGel creates a virtual 2-D gel based on theoretical molecular weights and calculated isoelectric points from a set of input proteins or proteomes.

NAR Web Server Issue 2003
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tagscomputer simulation gel electrophoresis isoelectric point molecular weight proteins proteomics reproducibility of results

NCI FlickerTool Content

http://www.lecb.ncifcrf.gov/flicker/

Expression > Protein Expression
Protein > Protein Expression

Flicker provides the means to compare images from different internet sources using a java-enabled web browser. It was originally designed for the comparison of 2D gels.

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tagscomputer-assisted image processing factual databases gel electrophoresis gels humans proteins

ProMoSTTool Content

http://proteomics.mcw.edu/promost

Expression > Protein Expression
Protein > Biochemical Features
Protein > Protein Expression
Protein > Proteomics

ProMoST (Protein Modification Screening Tool) is a program to calculate accurate MW and pI values from proteins considering the effects of post-translational modifications. Results are displayed as calculated values of pI and MW for each protein and are also plotted on two-dimensional (2D) gel images.

This content is being maintained by halligan.

NAR Web Server Issue 2004
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tagsalgorithms gel electrophoresis isoelectric point molecular weight post-translational protein processing proteins

ProteinCCDTool Content

http://xtal.nki.nl/ccd

DNA > Tools For the Bench
Expression > Protein Expression
Protein > Domains and Motifs
Protein > Protein Expression
Protein > Sequence Data
Protein > Sequence Features
Protein > Sequence Retrieval

Protein Crystallographic Construct Design (Protein CCD) is a meta-web server that facilitates the design of several truncated constructs of a protein using experimental data or sequence analysis tools. From input DNA sequence, information on disorder, coiled coils, transmembrane segments, domains and domain linkers are collected from secondary structure prediction servers. Users can select starts and ends for protein constructs and ProteinCCD wil design suitable PCR primers.

NAR Web Server Issue 2009
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tagsamino acid sequence dna sequence analysis oligonucleotides polymerase chain reaction protein sequence analysis proteins secondary protein structure sequence deletion tertiary protein structure x-ray crystallography

SWISS-2DPAGEDatabase Content

http://us.expasy.org/ch2d/

Expression > Protein Expression
Protein > Protein Expression

This is a 2D gel electrophoresis database containing data for proteins identified on SDS-PAGE or 2D-PAGE reference maps.

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tagsanimals dictyostelium escherichia coli factual databases gel electrophoresis humans mice saccharomyces cerevisiae

Tags associated with subcategory 'Protein/Protein Expression'

gel electrophoresis factual databases proteins humans molecular weight cluster analysis gene expression profiling classification oligonucleotide array sequence analysis tertiary protein structure x-ray crystallography bayes theorem isoelectric point proteomics programming languages systems integration publishing gene expression gels sequence deletion post-translational protein processing polyacrylamide gel electrophoresis secondary protein structure reproducibility of results documentation online systems computer-assisted image processing algorithms computer simulation genome animals dictyostelium automatic data processing database management systems hydrogen-ion concentration dna sequence analysis oligonucleotides polymerase chain reaction protein sequence analysis amino acid sequence saccharomyces cerevisiae proteome research design escherichia coli mice