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Yeast

These links include resources specific to yeast such as gene indices and genome databases.

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Found 18 links

Displaying 15 links

AHMIITool Content

http://www.wdcm.org/AHMII/ahmii.html

Model Organisms > Microbes
Model Organisms > Other Organisms
Model Organisms > Yeast

Agent to Help Microbial Information Integration (AHMII) offers a search engine for particular strains present in culture collections and databases in bacteria, fungi, yeasts and cell lines.

NAR Web Server Issue 2003
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tagsbacteria cell line fungi microbiological techniques reproducibility of results systems integration yeasts

E-RNAiTool Content

http://e-rnai.dkfz.de/

DNA > Tools For the Bench
Expression > Gene Regulation
Model Organisms > Fly
Model Organisms > Other Organisms
Model Organisms > Yeast
RNA > Structure Prediction, Visualization, and Design

E-RNAi is a tool for designing and evaluating dsRNA constructs suitable for RNAi experiments in 12 organisms including Drosophila, C. elegans, human and other emerging model organisms. E-RNAi also facilitates the design of secondary RNAi reagents for validation experiments, evaluation of pooled siRNA reagents and batch design.

NAR Web Server Issue 2005NAR Web Server Issue 2010
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tagsanimals apoptosis caenorhabditis elegans cell cycle cell survival computational biology core binding factor alpha 2 subunit cultured cells dna primers dna-binding proteins double-stranded rna drosophila melanogaster drosophila proteins essential genes gene knockdown techniques genome genomic library genomics humans indicators and reagents inhibitor of apoptosis proteins insect genes phenotype proteome proto-oncogene proteins reproducibility of results rna interference rna sequence analysis sequence homology small interfering rna transcription factors

GeneMANIATool Content

http://www.genemania.org

Expression > Gene Set Analysis
Human Genome > Genomics
Model Organisms > Fly
Model Organisms > Mouse and Rat
Model Organisms > Plants
Model Organisms > Worm
Model Organisms > Yeast

GeneMANIA is web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays. Users input a query list for extension and weighting with functionally similar genes. Six organisms are supported.

This content is being maintained by baderg.

NAR Web Server Issue 2010
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tagsalgorithms animals computational biology factual databases gene regulatory networks genes genomics humans mice
setsUniversity of Toronto

Interolog/Regulog DatabaseDatabase Content

http://interolog.gersteinlab.org/

Model Organisms > Fly
Model Organisms > Plants
Model Organisms > Worm
Model Organisms > Yeast
Protein > Interactions, Pathways, Enzymes

Database of protein orthologs that interact (interologs) and proteins with conserved regulatory relationships across species (regulogs). Contains data for C. elegans, Drosophila, Arabidopsis, and Yeast.

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tagsamino acid sequence amino acid sequence homology animals bacterial dna bacterial genome bacterial proteins binding sites caenorhabditis elegans caenorhabditis elegans proteins computational biology conserved sequence dna dna-binding proteins drosophila melanogaster drosophila proteins fungal dna fungal genome genome helicobacter pylori helminth dna protein binding protein databases protein interaction mapping proteins saccharomyces cerevisiae saccharomyces cerevisiae proteins

MIPSDatabase Content

http://mips.gsf.de/

Model Organisms > General Resources
Model Organisms > Other Organisms
Model Organisms > Plants
Model Organisms > Yeast
Protein > Interactions, Pathways, Enzymes
Sequence Comparison > Comparative Genomics

Munich Information Centre for Protein Sequences projects include: fungal genome analysis, plant genome bioinformatics, structural genomics, proteomics and genome annotation. Projects and databases include: CYGD, MNCDB, NGFN, MPPI, SIMAP, QUIPOS, MATDB, MOsDB, SPUTNIK, and PEDANT.

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tagsanimals arabidopsis arabidopsis proteins biological models complementary dna computational biology dna transposable elements expressed sequence tags fungi gene duplication genetic databases genome genomics humans mice nucleic acid databases nucleic acid sequence homology oryza sativa plant genes plant genome protein binding protein databases protein interaction mapping protein sequence analysis proteins proteomics saccharomyces cerevisiae proteins sequence homology

MYBSTool Content

http://cg1.iis.sinica.edu.tw/~mybs/index.php

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Model Organisms > Yeast

MYBS (Mining Yeast Binding Sites) is a tool for mapping Transcription factors (TFs) and their binding sites (TFBSs) that integrates both experimentally verified (ChIP-chip data) and predicted position weight matrixes (PWMs) from several databases.

NAR Web Server Issue 2007
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tagsalgorithms base sequence binding sites computational biology dna sequence analysis gene targeting molecular sequence data oligonucleotide array sequence analysis protein binding saccharomyces cerevisiae saccharomyces cerevisiae proteins sequence alignment transcription factors

NCBI Human DNA Reference SequenceDatabase Content

http://www.ncbi.nlm.nih.gov/RefSeq/

DNA > Sequence Retrieval and Submission
Human Genome > Annotations
Model Organisms > Mouse and Rat
Model Organisms > Yeast

Downloadable human DNA reference sequence as well as other reference genome sequences.

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tagsamino acid sequence animals base sequence dna sequence analysis exons genetic databases genome genomics humans messenger rna mice national library of medicine (u.s.) nucleic acid databases protein databases protein sequence analysis proteins pseudogenes rats reference standards rna sequence analysis sequence analysis systems integration united states untranslated rna

RF_DYMHCTool Content

http://www.bioinf.seu.edu.cn/Recombination/rf_dymhc.htm

DNA > Structure and Sequence Feature Detection
Model Organisms > Yeast

RF_DYMHC (Random Forest-Based System for Detecting Yeast Meiotic Recombination Hotspots and Coldspots) predicts recombination hot/cold spots in the yeast genome.

NAR Web Server Issue 2007
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tagsalgorithms artificial intelligence automated pattern recognition chromosome mapping codon computational biology dna sequence analysis fungal genome genetic recombination meiosis nucleotides saccharomyces cerevisiae

rMotifTool Content

http://bioportal.weizmann.ac.il/~lapidotm/rMotif/html/

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Model Organisms > Yeast

rMotif provides tools for the discovery of de-novo, fully, or partially characterized regulatory motifs including transcription factor binding sites (TFBS).

NAR Web Server Issue 2003
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tagsdna sequence analysis genetic promoter regions genetic transcription messenger rna nucleic acid regulatory sequences response elements

S. pombe genomeDatabase Content

http://www.sanger.ac.uk/Projects/S_pombe/

Model Organisms > Yeast

Schizosaccharomyces pombe Genome Sequencing Project.

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tagsbase sequence centromere chromosome mapping dna sequence analysis eukaryotic cells fungal chromosomes fungal dna fungal genome fungal proteins gene duplication humans inborn genetic diseases introns schizosaccharomyces tertiary protein structure

SCMDDatabase Content

http://scmd.gi.k.u-tokyo.ac.jp/

Model Organisms > Yeast

The Sacharomyces Cerevisiae Morphological Database (SCMD) is a collection of micrographs of budding yeast mutants; visualization and data mining tools are provided.

NAR Web Server Issue 2005
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tagscell cycle computational biology computer-assisted image processing factual databases fluorescence microscopy genetic databases mutation saccharomyces cerevisiae

SGDDatabase Content

http://genome-www.stanford.edu/Saccharomyces/

Model Organisms > Yeast

The Saccharomyces Genome Database.

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tagsamino acid motifs amino acid sequence amino acid sequence homology animals base sequence bibliographic databases computational biology factual databases fungal genes fungal genome fungal proteins genetic databases humans molecular models molecular sequence data molecular weight nucleic acid sequence homology protein conformation protein databases saccharomyces cerevisiae saccharomyces cerevisiae proteins saccharomycetales sequence alignment sequence homology terminology as topic

T-profilerTool Content

http://www.t-profiler.org/

Expression > Transcript Expression Analysis
Model Organisms > Yeast

T-profiler is a tool for the analysis of gene expression data from yeast that uses the t-test to score changes in the average activity of pre-defined groups of genes.

NAR Web Server Issue 2005
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tagsalgorithms candida albicans gene expression profiling oligonucleotide array sequence analysis saccharomyces cerevisiae

The GRID - General Repository for Interaction DatasetsDatabase Content

http://www.thebiogrid.org/

Model Organisms > Fly
Model Organisms > Yeast
Protein > Interactions, Pathways, Enzymes

Database of genetic and physical interactions; contains interaction data from several genome/proteome wide-studies, the MIPS database, and BIND; provides a powerful visualization system for looking at interactions graphically.

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tagsdatabase management systems fungal dna fungal genes genetic databases nucleic acid databases protein databases saccharomyces cerevisiae saccharomyces cerevisiae proteins

Virtual Library--YeastResource Content

http://genome-www.stanford.edu/Saccharomyces/VL-yeast.html

Model Organisms > Yeast

Links to yeast resources.

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Tags associated with subcategory 'Model Organisms/Yeast'

computational biology saccharomyces cerevisiae humans genetic databases animals protein databases dna sequence analysis genomics saccharomyces cerevisiae proteins algorithms genome base sequence proteins mice chromosome mapping fungal genome amino acid sequence amino acid sequence homology factual databases reproducibility of results genetic recombination meiosis expressed sequence tags nucleotides rats controlled vocabulary terminology as topic fungal rna fungal gene expression regulation sequence tagged sites molecular sequence data gene targeting untranslated rna binding sites protein binding restriction mapping codon automated pattern recognition artificial intelligence sequence alignment gene expression genetic promoter regions genes insect genes phenotype inhibitor of apoptosis proteins indicators and reagents gene knockdown techniques genomic library proteome proto-oncogene proteins gene expression profiling oligonucleotide array sequence analysis transcription factors small interfering rna rna interference rna sequence analysis sequence homology essential genes drosophila proteins response elements fungi nucleic acid regulatory sequences messenger rna neural networks (computer) saccharomycetales genetic transcription microbiological techniques systems integration double-stranded rna drosophila melanogaster dna-binding proteins dna primers yeasts core binding factor alpha 2 subunit cultured cells introns tertiary protein structure molecular weight fluorescence microscopy University of Toronto candida albicans cell cycle cell survival mutation bacterial dna helicobacter pylori helminth dna dna conserved sequence bacterial proteins caenorhabditis elegans caenorhabditis elegans proteins apoptosis cell line bibliographic databases metabolites united states reference standards exons national library of medicine (u.s.)