Fly

This section contains links to genome resources, tools, and databases for flies including Drosophila and the mosquito.

Found 20 links

Displaying 15 links

BSQATool Content

http://www.beespace.uiuc.edu/QuestionAnswer

BeeSpace Question/Answering (BSQA) system is a web server that performs integrated text mining for insect biology, covering diverse aspects from molecular interactions of genes to insect behavior. BSQA recognizes a number of entities and relations in Medline documents about the model insect, Drosophila melanogaster.

DIANA-microTTool Content

http://www.microrna.gr/microT

The DIANA-microT web server predicts targets for miRNAs and provides functional information on the predicted miRNA:target gene interaction from various online biological resources. Updates enable the association of miRNAs to diseases through bibliographic analysis and connection to the UCSC genome browser.

Drosophila DNase I footprint databaseDatabase Content

http://www.flyreg.org/

Database of transcription factor binding sites created from systematic literature curation and genome annotation of DNase I footprints for Drosophila.

This content is being maintained by caseybergman.

ECR BrowserTool Content

http://ecrbrowser.dcode.org/

The ECR (Evolutionary Conserved Regions) browser is a web-based tool for visualizing and navigating through whole genome alignments of several vertebrate species. Users can also submit sequences for alignment with one of the genomes represented.

Ensembl Mosquito Genome BrowserDatabase Content

http://www.ensembl.org/Anopheles_gambiae/

This site presents the tenfold whole genome shotgun assembly of the PEST strain of anopheles gambiae, as prepared by The International Anopheles Genome project.

FlyBaseDatabase Content

http://flybase.bio.indiana.edu/

FlyBase is a database of genetic and molecular data for Drosophila. FlyBase includes data on all species from the family Drosophilidae; the primary species represented is Drosophila melanogaster.

GeneMANIATool Content

http://www.genemania.org

GeneMANIA is web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays. Users input a query list for extension and weighting with functionally similar genes. Six organisms are supported.

This content is being maintained by baderg.

Genome SurveyorTool Content

http://veda.cs.uiuc.edu/gs

Genome Surveyor is a tool for discovery and analysis of cis-regulatory elements and transcription factors in Drosphila built on the GBrowse genome browser.

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REDflyDatabase Content

http://redfly.ccr.buffalo.edu/?content=/search.php

Regulatory Element Database for Drosophila (REDfly) is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs). REDfly seeks to include all experimentally verified fly CRMs along with their DNA sequence, their associated genes, and the expression patterns they direct.

Target ExplorerTool Content

http://luna.bioc.columbia.edu/Target_Explorer/

Target Explorer can be used to create custom matrices to describe transcription factor binding sites (TFBS), search for clusters of TFBS, and identify target genes. Free registration is required.

Tags associated with subcategory 'Model Organisms/Fly'

animals humans genetic databases genome computational biology drosophila melanogaster binding sites genomics dna sequence analysis transcription factors systems integration database management systems insect genes mice drosophila proteins algorithms sequence alignment amino acid sequence protein databases genetic variation inborn genetic diseases biological evolution gene expression profiling transcriptional regulatory elements markov chains missense mutation signal transduction single nucleotide polymorphism proteins protein sequence analysis peptide library phylogeny predictive value of tests statistical models dna dna footprinting genome annotation testis rna human genome membrane proteins University of Manchester controlled vocabulary likelihood functions molecular evolution genetic transcription genetic models conserved sequence drosophila species specificity terminology as topic tertiary protein structure rats synteny nucleic acid regulatory sequences fishes sequence homology small interfering rna human genome project genes factual databases expressed sequence tags california rna sequence analysis gene expression regulation messenger rna micrornas rna interference reproducibility of results nucleic acid sequence homology membrane glycoproteins double-stranded rna dna-binding proteins core binding factor alpha 2 subunit cultured cells dna primers essential genes gene knockdown techniques proteome proto-oncogene proteins phenotype molecular sequence data genomic library indicators and reagents inhibitor of apoptosis proteins untranslated regions male protein binding protein interaction mapping amino acid sequence homology helminth dna helicobacter pylori caenorhabditis elegans caenorhabditis elegans proteins fungal genome anti-infective agents archaeal genes initiator codon molecular models open reading frames gene expression