> > Sequence Polymorphisms

Sequence Polymorphisms

Links to various sequence polymorphism databases and resources concerning SNPs, short deletion, insertion polymorphisms and other unique genomic features.

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Found 46 links

Displaying 15 links

AutoSNPdbTool Content

http://autosnpdb.qfab.org.au/

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

SNPServer combines BLAST, cap3 and a SNP discovery module into a single pipeline for the discovery of SNPs in user submitted files or dynamically created assemblies.

NAR Web Server Issue 2005
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tagsdna sequence analysis sequence alignment single nucleotide polymorphism time factors

Cancer Genome Anatomy ProjectTool Content

http://cgap.nci.nih.gov/

DNA > Sequence Polymorphisms
Expression > cDNA, EST, SAGE
Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms
Model Organisms > Other Vertebrates

Goal is to determine the gene expression profiles of normal, precancer, and cancer cells; resources for human and mouse include ESTs, gene expression patterns, SNPs, cluster assemblies, cytogenetic information, and tools to query and analyze the data.

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tagsgene library human genome project humans neoplasms

CanPredictTool Content

http://www.cgl.ucsf.edu/Research/genentech/canpredict/

Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms
Protein > Sequence Features

CanPredict uses a combination of computational methods to predict whether specific sequence changes in a protein are likely to be cancer-associated mutations.

NAR Web Server Issue 2007
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tagsalgorithms alleles amino acids computational biology expressed sequence tags genetic predisposition to disease humans missense mutation neoplasm dna neoplasms single nucleotide polymorphism tumor cell line

CARGOTool Content

http://cargo2.bioinfo.cnio.es/docs/aboutCargo.html

DNA > Annotations
DNA > Sequence Polymorphisms
Human Genome > Annotations
Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms
Literature > Text Mining and Semantics
Protein > Interactions, Pathways, Enzymes

CARGO (Cancer And Related Genes Online) is a portal that uses widgets to allow users to mine literature using iHOP, retrieve disease information from OMIM, visualize 3D SNPs, query protein interactions, and view summarized gene annotation information for cancer related genes in human.

NAR Web Server Issue 2007
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tagsanimals biology computational biology database management systems factual databases genetic databases humans programming languages systems integration

dbSNPDatabase Content

http://www.ncbi.nlm.nih.gov/SNP/

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

Repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms; NCBI collaboration with NHGRI.

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tagsgenetic databases human genome humans single nucleotide polymorphism
setsNational Center for Biotechnology Information (NCBI)

DNA Methylation DatabaseDatabase Content

http://www.methdb.de/

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

The database contains information about the occurrence of methylated cytosines in the DNA.

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EpiToolKitTool Content

http://www.epitoolkit.org

Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms
Protein > Molecular Dynamics and Docking

A suite of tools for immunological research. EpiToolKit offers a variety of prediction methods that may be run simultaneously for predicting MHC Class I and II ligands, and minor histocompatibility antigens. The influence of sequence polymorphisms or mutations on potential T-cell epitopes may also be examined.

NAR Web Server Issue 2008
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tagsacetaminophen child computational biology dosage forms drug packaging france genetic polymorphism histocompatibility antigens humans ligands mutation neoplasm antigens non-narcotic analgesics oral administration peptides poison control centers poisoning protein sequence analysis t-lymphocyte epitopes

FastSNPTool Content

http://fastsnp.ibms.sinica.edu.tw

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

Function Analysis and Selection Tool for Single Nucleotide Polymorphisms (FastSNP) allows users to identify and prioritize SNPs that are likely to have functional effects.

This content is being maintained by fastsnp.

NAR Web Server Issue 2006
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tagsgene frequency genetic predisposition to disease phenotype proteins risk single nucleotide polymorphism

GenoWatchTool Content

http://genepipe.ngc.sinica.edu.tw/genowatch

Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms

A disease gene mining browser for association study. GenoWatch is a real-time batch SNP and short tandem repeat polymorphism pipeline that extracts current information from public domain websites such as NCBI, UniProt, KEGG and GO so that users can select the appropriate disease candidate genes.

NAR Web Server Issue 2008
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tagschromosome mapping genes genetic databases genetic markers genetic polymorphism human genome humans inborn genetic diseases microsatellite repeats pubmed single nucleotide polymorphism

GeSBAPTool Content

http://bioinfo.cipf.es/gesbap/

Expression > Gene Set Analysis
Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms

Gene Set based Analysis of Polymorphisms (GeSBAP) implements the gene set analysis to the evaluation of genome wide association studies. Gene set analysis is based on testing the association of modules of functionally related genes.

NAR Web Server Issue 2009
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tagsbiological processes breast neoplasms female genes genetic variation genome-wide association study humans single nucleotide polymorphism

GVSTool Content

http://gvs.gs.washington.edu/GVS/index.jsp

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

Genome Variation Server (GVS) is a database that provides access to human genotype data found in dbSNP, and tools for the analysis of genotype data.

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HGVbaseDatabase Content

http://www.hgvbaseg2p.org/index

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

Human Genome Variation database - curated; attempt to summarize all known sequence variations in the human genome, to facilitate research into how genotypes affect common diseases, drug responses, and other complex phenotypes.

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tagsbase sequence chromosome mapping database management systems gene frequency genetic variation human genome humans inborn genetic diseases nucleic acid databases single nucleotide polymorphism systems integration

HomozygosityMapperTool Content

http://www.homozygositymapper.org

DNA > Sequence Polymorphisms
Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms

A web base approach to homozygosity mapping. Users upload SNP genotype files into a marker database for analysis and detection of long homozygous stretches.

NAR Web Server Issue 2009
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tagschromosome mapping genetic heterogeneity genetic linkage genotype homozygote reproducibility of results single nucleotide polymorphism

Human Genome Variation NomenclatureResource Content

http://www.hgvs.org/rec.html

Human Genome > Annotations
Human Genome > Genomics
Human Genome > Other Resources
Human Genome > Sequence Polymorphisms

The Human Genome Society has established a committee to suggest standards for the description of sequence variants in DNA, RNA, and protein sequences. The standards are linked here.

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i-GSEA4GWASTool Content

http://gsea4gwas.psych.ac.cn

Human Genome > Genomics
Human Genome > Sequence Polymorphisms

i-GSEA4GWAS is a web server for identification of pathways and gene sets associated with traits. An improved gene set enrichment analysis (i-GSEA) is applied to genome wide association studies (GWAS).

NAR Web Server Issue 2010
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tagsalgorithms disease genes genome-wide association study humans single nucleotide polymorphism

Tags associated with subcategory 'Human Genome/Sequence Polymorphisms'

humans single nucleotide polymorphism algorithms computational biology animals dna sequence analysis sequence alignment nucleic acid databases genetic databases protein sequence analysis human genome genotype genetic variation dna fingerprinting repressor proteins least-squares analysis pseudogenes t-lymphocyte epitopes probability proteins statistical models peptides protein binding online systems protein databases quantitative structure-activity relationship major histocompatibility complex molecular models multivariate analysis lac repressors mutation chromosome mapping conserved sequence bacteriophage t4 bacterial proteins terminology as topic tertiary protein structure programming languages escherichia coli proteins false positive reactions genomics lactose muramidase inborn genetic diseases hiv-1 genes protein biosynthesis hiv protease missense mutation mice alleles bayes theorem expressed sequence tags genetic polymorphism drosophila kir receptors National Center for Biotechnology Information (NCBI) polymerase chain reaction genetic techniques statistical data interpretation molecular sequence data gene library human genome project fluorescence dna antigen receptors automation base sequence immunologic receptors hla antigens restriction fragment length polymorphism quantitative trait loci systems integration tumor cell line neoplasm dna nucleic acid probes nucleic acid repetitive sequences signal transduction genetic predisposition to disease protein conformation phenotype rna splicing transcription factors molecular evolution linkage disequilibrium time factors genetic transcription haplotypes rats neoplasms gene order genetic translocation genome dogs chromosomes amino acid substitution binding sites chromosome inversion mitochondrial genome synteny natural language processing