> > Genomics

Genomics

These links provide up-to-date and relevant information for genomic researchers.

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Found 19 links

Displaying 15 links

AutoClass@IJMTool Content

http://www.ijm.fr/en/ijm/resources/bioinformatics/

Expression > Gene Set Analysis
Expression > Protein Expression
Expression > Transcript Expression Analysis
Human Genome > Genomics
Protein > Protein Expression

AutoClass is an unsupervised Bayesian classification system. AutoClass@IJM provides a web interface for this clustering algorithm.

NAR Web Server Issue 2009
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tagsalgorithms bayes theorem classification cluster analysis gene expression profiling oligonucleotide array sequence analysis

DIANA-microTTool Content

http://www.microrna.gr/microT

Expression > Gene Regulation
Human Genome > Genomics
Model Organisms > Fly
Model Organisms > Worm
RNA > Functional RNAs

The DIANA-microT web server predicts targets for miRNAs and provides functional information on the predicted miRNA:target gene interaction from various online biological resources. Updates enable the association of miRNAs to diseases through bibliographic analysis and connection to the UCSC genome browser.

NAR Web Server Issue 2009NAR Web Server Issue 2011
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tagsalgorithms binding sites gene expression regulation messenger rna micrornas rna sequence analysis

GendooTool Content

http://gendoo.dbcls.jp

DNA > Annotations
Expression > Gene Set Analysis
Human Genome > Genomics
Literature > Text Mining and Semantics

Gene Disease Features Ontology-based Overview System (Gendoo) is a web tool for visualizing disease feature profiles generated from the assignment of MeSH vocabulary for associated drugs, biological phenomena and anatomy to OMIM data. This approach assists in interpreting -omic data for its molecular and clinical aspects.

This content is being maintained by thecla.

NAR Web Server Issue 2009
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tagsdiabetes mellitus disease genes genetic databases medical subject headings

GeneMANIATool Content

http://www.genemania.org

Expression > Gene Set Analysis
Human Genome > Genomics
Model Organisms > Fly
Model Organisms > Mouse and Rat
Model Organisms > Plants
Model Organisms > Worm
Model Organisms > Yeast

GeneMANIA is web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays. Users input a query list for extension and weighting with functionally similar genes. Six organisms are supported.

This content is being maintained by baderg.

NAR Web Server Issue 2010
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tagsalgorithms animals computational biology factual databases gene regulatory networks genes genomics humans mice
setsUniversity of Toronto

Genome HubResource Content

http://www.genome.gov/10000375

Human Genome > Genomics

Lists of genome-related sites maintained by the NHGRI on behalf of the International Human Genome Sequencing Consortium.

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GSA-SNPTool Content

http://gsa.muldas.org

Expression > Gene Set Analysis
Human Genome > Genomics

GSA-SNP web server performs gene set analysis (GSA) on genome-wide association data, using 3 different GSA methods.

NAR Web Server Issue 2010
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tagsadult body height genome-wide association study humans single nucleotide polymorphism

Human Genome Variation NomenclatureResource Content

http://www.hgvs.org/rec.html

Human Genome > Annotations
Human Genome > Genomics
Human Genome > Other Resources
Human Genome > Sequence Polymorphisms

The Human Genome Society has established a committee to suggest standards for the description of sequence variants in DNA, RNA, and protein sequences. The standards are linked here.

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i-GSEA4GWASTool Content

http://gsea4gwas.psych.ac.cn

Human Genome > Genomics
Human Genome > Sequence Polymorphisms

i-GSEA4GWAS is a web server for identification of pathways and gene sets associated with traits. An improved gene set enrichment analysis (i-GSEA) is applied to genome wide association studies (GWAS).

NAR Web Server Issue 2010
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tagsalgorithms disease genes genome-wide association study humans single nucleotide polymorphism

ICSNPathwayTool Content

http://icsnpathway.psych.ac.cn/

Human Genome > Genomics
Human Genome > Sequence Polymorphisms

ICSNPathway is a web tool for the identification of candidate causal SNPs and their corresponding candidate causal pathways from genome wide association studies. ISCNPathway integrates linkage disequilibrium analysis, functional SNP annotation and pathway based analysis to identify these SNPs and pathways.

NAR Web Server Issue 2011
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IGGTool Content

http://bioinfo.hku.hk:13080/iggweb/

Human Genome > Genomics

Integration of Genotypes from Genechips (IGG) is a Java-based tool with graphic interface to integrate genotypes across high throughput genotyping platforms from Affymetrix and Illumina and the HapMap Project. It is equipped with a series of functions to control qualities of genotype integration and to flexibly export genotypes for genetic studies as well.

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tagsalgorithms database management systems gene expression profiling genetic databases genomics oligonucleotide array sequence analysis systems integration

INTERFEROMEDatabase Content

http://www.interferome.org/

Expression > Gene Regulation
Human Genome > Genomics

INTERFEROME is an open access database of types I, II and III Interferon regulated genes collected from analysing expression data sets of cells treated with IFNs. This database integrates expression information with annotation, ontology, orthologue sequences from 37 species, tissue expression patterns and gene regulatory information.

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tagsanimals gene expression profiling gene expression regulation genetic databases genetic promoter regions humans interferons mice oligonucleotide array sequence analysis proteomics

mGene.webTool Content

http://www.mgene.org/web

DNA > Gene Prediction
Human Genome > Genomics
Model Organisms > General Resources

mGene.web is a web server for the genome wide prediction of protein coding genes from eukaryotic DNA sequences based on pre-computed models of gene structures. Users may also compute their own model using their own data.

NAR Web Server Issue 2009
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tagsalgorithms animals artificial intelligence caenorhabditis caenorhabditis elegans computational biology dna sequence analysis genes genomics helminth genes helminth genome proteins reproducibility of results reverse transcriptase polymerase chain reaction rna splice sites transcription initiation site

mirToolsTool Content

http://centre.bioinformatics.zj.cn/mirtools/

Expression > Gene Regulation
Human Genome > Genomics
RNA > Functional RNAs

mirTools allows users to comprehensively characterize the small RNA transcriptome from high-throughput sequencing data. Users can filter quality reads, align short reads to the reference genome, classify small RNA candidates into known miRNAs, non-coding RNA, genomic repeats, etc. among other analysis tools.

NAR Web Server Issue 2010
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tagsgene expression profiling high-throughput screening assays humans messenger rna rna sequence analysis

MMIATool Content

http://cancer.informatics.indiana.edu/mmia

Expression > Gene Regulation
Expression > Transcript Expression Analysis
Human Genome > Genomics
RNA > Functional RNAs

microRNA and mRNA Integrated Analysis (MMIA) is a web server that integrates miRNA and mRNA expression data with predicted miRNA target information. MMIA incorporates miRNA prediction algorithms (TargetScan, PITA, PicTar).

NAR Web Server Issue 2009
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tagsgenetic databases humans messenger rna micrornas rna interference

MutalyzerTool Content

http://www.mutalyzer.nl/

Human Genome > Annotations
Human Genome > Genomics
Human Genome > Other Resources
Human Genome > Sequence Polymorphisms

Mutalyzer was primarily developed to check the description of sequence variants identified in a gene during genetic testing according to the rules of the standard human sequence variant nomenclature of the Human Genome Variation Society. The Mutalyzer 2 parser is based on a formalized description of the nomenclature in Extended Backus-Naur Form. Mutalyzer applies the nomenclature rules and corrects variant descriptions accordingly.

This content is being maintained by P.Taschner.

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tagsamino acid sequence base sequence computational biology dna mutational analysis human genome humans molecular sequence data mutation nucleic acid databases single nucleotide polymorphism terminology as topic

Tags associated with subcategory 'Human Genome/Genomics'

humans genomics algorithms genetic databases gene expression profiling animals genes computational biology mice single nucleotide polymorphism oligonucleotide array sequence analysis messenger rna complementary dna chromosome mapping rna interference proteomics genome-wide association study genetic promoter regions genetic linkage interferons reproducibility of results dna sequence analysis cluster analysis classification database management systems systems integration micrornas gene expression regulation bayes theorem medical subject headings rna sequence analysis sequence alignment reverse transcriptase polymerase chain reaction rna splice sites disease transcription initiation site high-throughput screening assays body height gene expression dna copy number variations human genome neoplasms diabetes mellitus helminth genome bacterial genome gene regulatory networks factual databases base sequence amino acid sequence dna mutational analysis artificial intelligence helminth genes caenorhabditis elegans caenorhabditis proteins binding sites mitochondrial genome genome molecular evolution phylogeny adult synteny rats genetic translocation gene order nucleic acid databases mutation molecular sequence data terminology as topic University of Toronto dogs chromosomes chromosome inversion