> > Protein Expression

Protein Expression

This section contains links to protein expression data and resources for analysis of data including 2D gels.

RSS FeedCompact ViewList as XMLList as JSON

Found 21 links

Displaying 15 links

AutoClass@IJMTool Content

http://www.ijm.fr/en/ijm/resources/bioinformatics/

Expression > Gene Set Analysis
Expression > Protein Expression
Expression > Transcript Expression Analysis
Human Genome > Genomics
Protein > Protein Expression

AutoClass is an unsupervised Bayesian classification system. AutoClass@IJM provides a web interface for this clustering algorithm.

NAR Web Server Issue 2009
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms bayes theorem classification cluster analysis gene expression profiling oligonucleotide array sequence analysis

BabelomicsTool Content

http://www.babelomics.org

DNA > Annotations
Expression > Gene Regulation
Expression > Networks
Expression > Protein Expression
Expression > Transcript Expression Analysis
Expression > cDNA, EST, SAGE
Human Genome > Annotations
Protein > Interactions, Pathways, Enzymes

Babelomics is a suite of web tools for the functional annotation and analysis of groups of genes in high throughput experiments. Tools include: FatiGO, FatiGOplus, Fatiscan, Gene Set Enrichment Analysis (GSEA), Marmite, and the Tissues Mining Tool (TMT). Other tools include Biocarta pathways, Transfac and a tool de novo functional annotation of sequences.

This content is being maintained by juan_aguilar.

NAR Web Server Issue 2005NAR Web Server Issue 2006NAR Web Server Issue 2008NAR Web Server Issue 2010
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms animals artificial intelligence binding sites chromosome mapping dna sequence analysis gene expression profiling genes genetic databases genomics humans mice oligonucleotide array sequence analysis phylogeny proteomics rats sequence alignment systems biology systems integration transcription factors

bioNMFTool Content

http://bionmf.dacya.ucm.es/

DNA > Structure and Sequence Feature Detection
Expression > Protein Expression
Expression > Transcript Expression Analysis
Literature > Text Mining and Semantics
Protein > Proteomics

A web-based tool based on nonnegative matrix factorization (NMF) that can be used to provide new information from multi-dimensional biological data sets.

NAR Web Server Issue 2008
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms cluster analysis computational biology gene expression profiling

ENDEAVOURTool Content

http://www.esat.kuleuven.be/endeavour

Expression > Networks
Expression > Protein Expression
Expression > Transcript Expression Analysis
Expression > cDNA, EST, SAGE

ENDEAVOUR is a computational approach to prioritize candidate genes for further study. Users input training genes already known to be involved in the process under study and the candidate genes to prioritize. The web server supports multiple species and integrates multiple genomic data to generate the final prioritization. ENDEAVOUR has been benchmarked in silico and experimentally validated leading to the discovery of novel disease genes in several genetic diseases.

This content is being maintained by ltranche.

NAR Web Server Issue 2008
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms animal models animals caenorhabditis elegans cell differentiation chromosome mapping computational biology drosophila melanogaster gene expression regulation genes genetic models genetic predisposition to disease humans mice rats roc curve sensitivity and specificity statistical models zebrafish

ExPASy 2-D PAGE databases and servicesResource Content

http://us.expasy.org/ch2d/2d-index.html

Expression > Protein Expression
Protein > Protein Expression

References to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsautomatic data processing factual databases gel electrophoresis humans proteins publishing reproducibility of results

GELBANKDatabase Content

http://gelbank.anl.gov/

Expression > Protein Expression
Protein > Protein Expression
Protein > Proteomics

GELBANK is a database of 2D gel images of proteomes for species with completed genomes. The user can search by sequence description or fragment, or by gel characteristics. Links are made between the sequence and gel when available.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsfactual databases gel electrophoresis genome humans hydrogen-ion concentration molecular weight proteome proteomics research design

GelScape and GelBankTool Content

http://www.gelscape.ualberta.ca/

Expression > Protein Expression
Protein > Protein Expression

GelScape is a platform-independent 1D and 2D gel analysis system that is freely available. Features include the ability to mark spots, to measure spot intensities and to archive gel images and annotations to the public database GelBank. Includes searchable access to GelBank\'s repository.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsdatabase management systems documentation factual databases gel electrophoresis online systems polyacrylamide gel electrophoresis

GeneExpress2.1Tool Content

http://wwwmgs.bionet.nsc.ru/mgs/gnw/

Expression > Protein Expression
Protein > Interactions, Pathways, Enzymes
Protein > Protein Expression

Integrated system for data analysis with information about expression and gene networks, also contains transcriptional regulatory regions database (TRRD).

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsdatabase management systems gene expression programming languages systems integration

GenoCADTool Content

http://www.genocad.org

DNA > Tools For the Bench
Expression > Networks
Expression > Protein Expression

GenoCAD is a web-based application for designing protein expression vectors, artificial gene networks and other genetic constructs composed of multiple functional blocks. Users can download the designed sequence for synthesis or further analysis. Users can also create personal accounts and thus can customize their workspace.

This content is being maintained by peccoud.

NAR Web Server Issue 2009
downloadDownload as XMLDownload as JSON
user feedback
5
Average: 5 (1 vote)
external linksLink on Twitter
tagsbase sequence chromosome mapping computer simulation dna gene database genetic code genetic engineering genetic models genomic islands nucleic acid databases reference standards synthetic genes

GOEASTTool Content

http://omicslab.genetics.ac.cn/GOEAST/

Expression > Protein Expression
Expression > Transcript Expression Analysis

Gene Ontology Enrichment Analysis (GOEAST) is a toolkit for the identification of over-represented GO terms in a given gene set. Distinguishing features include: capacity to analyze data from various sources and from multiple species, and the capacity to cross compare GO enriched terms across experiments to identify correlations.

This content is being maintained by e00011027.

NAR Web Server Issue 2008
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagscontrolled vocabulary gene expression profiling genes oligonucleotide array sequence analysis

JVirGelTool Content

http://www.jvirgel.de/

Expression > Protein Expression
Model Organisms > Microbes
Protein > Protein Expression
Protein > Proteomics

JVirGel creates a virtual 2-D gel based on theoretical molecular weights and calculated isoelectric points from a set of input proteins or proteomes.

NAR Web Server Issue 2003
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagscomputer simulation gel electrophoresis isoelectric point molecular weight proteins proteomics reproducibility of results

MADNetTool Content

http://www.bioinfo.hr/madnet

Expression > Networks
Expression > Protein Expression
Expression > Transcript Expression Analysis
Expression > cDNA, EST, SAGE

Microarray Database Network (MADNet) is a data mining and visualization tool for analysis of diverse high-throughput biological data such as microarrays and phage display experiments. Data is integrated with information from NCBI, KEGG TRANSFAC and DrugBank.

NAR Web Server Issue 2008
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsgene expression profiling genetic databases metabolic networks and pathways oligonucleotide array sequence analysis signal transduction systems integration

NCI FlickerTool Content

http://www.lecb.ncifcrf.gov/flicker/

Expression > Protein Expression
Protein > Protein Expression

Flicker provides the means to compare images from different internet sources using a java-enabled web browser. It was originally designed for the comparison of 2D gels.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagscomputer-assisted image processing factual databases gel electrophoresis gels humans proteins

OPTIMIZERTool Content

http://genomes.urv.es/OPTIMIZER/

DNA > Structure and Sequence Feature Detection
Expression > Protein Expression

OPTIMIZER is an application that optimizes the codon usage of a DNA sequence. This server can be used to predict and optimize the level expression of a gene in heterologous gene expression systems.

This content is being maintained by ppuigbo.

NAR Web Server Issue 2007
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms animals base sequence codon computational biology dna dna sequence analysis gene expression gene expression regulation molecular sequence data protein biosynthesis ribosomes

Pomelo IITool Content

http://pomelo2.bioinfo.cnio.es

Expression > Protein Expression
Expression > Transcript Expression Analysis

Pomelo II is a web-server for the analysis of gene (and protein) expression and tissue array data. Different statistical tests are applied depending on the input data. Links are also provided to additional sources of information such as PubMed references, Gene Ontology terms, GO terms, etc.

This content is being maintained by rdiaz02.

NAR Web Server Issue 2009
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsgene expression profiling proteins reproducibility of results statistical data interpretation tissue array analysis

Tags associated with subcategory 'Expression/Protein Expression'

gene expression profiling humans algorithms gel electrophoresis genes animals proteins mice factual databases oligonucleotide array sequence analysis computational biology systems integration genetic databases cluster analysis chromosome mapping gene expression regulation genetic models reproducibility of results dna sequence analysis proteomics molecular weight database management systems computer simulation cell cycle genetic transcription genome macromolecular substances helminth proteins helminth genes gene regulatory networks metabolism protein biosynthesis fungal genes drosophila ribosomes molecular sequence data software design protein databases isoelectric point transcription factors systems biology post-translational protein processing polyacrylamide gel electrophoresis publishing programming languages gene expression gels sequence alignment rats saccharomyces cerevisiae proteins saccharomyces cerevisiae proteome protein interaction mapping signal transduction dna phylogeny genomics two-hybrid system techniques three-dimensional imaging base sequence codon cell cycle proteins bacterial genes bacteria automatic data processing artificial intelligence binding sites computer-assisted image processing online systems documentation biological models caenorhabditis elegans dictyostelium nucleic acid databases roc curve genetic predisposition to disease drosophila melanogaster animal models cell differentiation sensitivity and specificity statistical models genomic islands genetic engineering genetic code zebrafish gene database hydrogen-ion concentration research design rabbits membrane proteins bacterial proteins tissue array analysis controlled vocabulary metabolic networks and pathways operon testis multiprotein complexes male pseudomonas aeruginosa regulon statistical data interpretation