Gene Set Analysis

Tools for evaluation of gene sets generated through any number of expression technologies.

Found 30 links

Displaying 15 links

ADGOTool Content

http://www.btool.org/ADGO2

ADGO is a web tool that provides composite interpretations for microarray data comparing two sample groups. It also provides composite interpretations and enrichment analysis for lists of genes from diverse sources of biological information.

BioProfiling.deTool Content

http://www.BioProfiling.de/gene_list.

BioProfiling.de provides a toolkit for the interpretation of gene or protein lists using enrichment of network based statistical frameworks.

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CCancerDatabase Content

http://mips.helmholtz-muenchen.de/proj/ccancer

CCancer is an automatically collected database of gene lists reported in various studies. The current coverage is 3369 gene lists from 2644 papers. Enrichment analysis reports intersecting gene lists with an inputted gene list.

G-SESAMETool Content

http://bioinformatics.clemson.edu/G-SESAME

G-SESAME is a suite of online tools for measuring the semantic similarities of Gene Ontology (GO) terms and the functional similarities of gene products, as well as data mining the GO database.

GendooTool Content

http://gendoo.dbcls.jp

Gene Disease Features Ontology-based Overview System (Gendoo) is a web tool for visualizing disease feature profiles generated from the assignment of MeSH vocabulary for associated drugs, biological phenomena and anatomy to OMIM data. This approach assists in interpreting -omic data for its molecular and clinical aspects.

This content is being maintained by thecla.

GeneCodisTool Content

http://genecodis.dacya.ucm.es

Originally designed in 2007 for modular enrichment analysis, GeneCodis assists in functional analysis of gene lists, integrating information from different sources. GeneCodis also finds regulatory patterns, and singular and modular patterns of interrelated annotations.

GeneMANIATool Content

http://www.genemania.org

GeneMANIA is web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays. Users input a query list for extension and weighting with functionally similar genes. Six organisms are supported.

This content is being maintained by baderg.

GeneSet2miRNATool Content

http://mips.helmholtz-muenchen.de/proj/gene2mir/

GeneSet2miRNA is a web based tool for identification of miRNA regulatory activity within an input gene list. A list of miRNA regulatory models is output.

GeSBAPTool Content

http://bioinfo.cipf.es/gesbap/

Gene Set based Analysis of Polymorphisms (GeSBAP) implements the gene set analysis to the evaluation of genome wide association studies. Gene set analysis is based on testing the association of modules of functionally related genes.

GSA-SNPTool Content

http://gsa.muldas.org

GSA-SNP web server performs gene set analysis (GSA) on genome-wide association data, using 3 different GSA methods.

MAGIATool Content

http://gencomp.bio.unipd.it/magia

miRNA and Genes Integrated Analysis (MAGIA) is a web tool for the integrative analysis of target predictions, miRNA and gene expression data

MARQTool Content

http://marq.dacya.ucm.es

MARQ is a web based application that allows users to compare a query set of genes (query signature) against a gene signature database built from GEO datasets for different organisms and platforms.

mirConnXTool Content

http://www.benoslab.pitt.edu/mirconnx

mirConnX is a web server for inferring, displaying and parsing mRNA and microRNA gene regulatory networks. mirConnX combines sequence information with gene expression data analysis to create a disease specific, genome wide regulatory network. Only supports human and mouse.

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PINTTool Content

http://csb2.ym.edu.tw/pint/

Pathway INtegration Tool (PINT) allows integration and annotation of systems biology markup language (SBML) files from a variety of sources. Gene list files are also accepted.

Tags associated with subcategory 'Expression/Gene Set Analysis'

humans genes gene expression profiling mice genetic databases animals gene expression regulation transcription factors algorithms oligonucleotide array sequence analysis gene regulatory networks proteins cell cycle disease testis male multiprotein complexes micrornas rats single nucleotide polymorphism genetic promoter regions dna sequence analysis genome-wide association study controlled vocabulary medical subject headings computational biology cluster analysis classification bayes theorem fungal genes computer simulation saccharomyces cerevisiae proteome protein interaction mapping saccharomyces cerevisiae proteins signal transduction three-dimensional imaging systems integration software design protein databases metabolism genetic variation drosophila database management systems genetic models genetic transcription macromolecular substances helminth proteins helminth genes genome female two-hybrid system techniques nitriles neoplastic gene expression regulation neoplasms neoplasm proteins protein kinase inhibitors quinolines erbb-2 receptor cyclin d metabolic networks and pathways University of Toronto neoplasm genes monte carlo method gene expression biological systems analysis documentation factual databases diabetes mellitus cattle cell aging caenorhabditis elegans biological models cell cycle proteins aniline compounds rac gtp-binding proteins ras proteins transcriptional regulatory elements skin muscles genomics cardiovascular diseases extracellular matrix breast neoplasms biological processes myocardium mitochondria data mining brain body height adult miRNA gene expression cluster analysis phylogeny ccaat-enhancer-binding proteins binding sites messenger rna tumor cell line mutation myeloid leukemia