Sequence Polymorphisms

Links to various sequence polymorphism databases and resources concerning SNPs, short deletion, insertion polymorphisms and other unique genomic features.

Found 42 links

Displaying 15 links

ARTSDatabase Content

http://andromeda.gsf.de/arts

ARTS (Advanced Retrieval Tool for SNPs) can be used to retrieve SNP that are polymorphic between several different mouse strains to aid in the design of genome-wide SNP marker panels.

AutoSNPdbTool Content

http://autosnpdb.qfab.org.au/

SNPServer combines BLAST, cap3 and a SNP discovery module into a single pipeline for the discovery of SNPs in user submitted files or dynamically created assemblies.

Cancer Genome Anatomy ProjectTool Content

http://cgap.nci.nih.gov/

Goal is to determine the gene expression profiles of normal, precancer, and cancer cells; resources for human and mouse include ESTs, gene expression patterns, SNPs, cluster assemblies, cytogenetic information, and tools to query and analyze the data.

CARGOTool Content

http://cargo2.bioinfo.cnio.es/docs/aboutCargo.html

CARGO (Cancer And Related Genes Online) is a portal that uses widgets to allow users to mine literature using iHOP, retrieve disease information from OMIM, visualize 3D SNPs, query protein interactions, and view summarized gene annotation information for cancer related genes in human.

dbSNPDatabase Content

http://www.ncbi.nlm.nih.gov/SNP/

Repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms; NCBI collaboration with NHGRI.

DNA Methylation DatabaseDatabase Content

http://www.methdb.de/

The database contains information about the occurrence of methylated cytosines in the DNA.

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FastSNPTool Content

http://fastsnp.ibms.sinica.edu.tw

Function Analysis and Selection Tool for Single Nucleotide Polymorphisms (FastSNP) allows users to identify and prioritize SNPs that are likely to have functional effects.

This content is being maintained by fastsnp.

g:ProfilerTool Content

http://biit.cs.ut.ee/gprofiler/

g:Profiler is a set of tools for functional annotation of gene lists that includes: g:GOSt, which retrieves the most significant Gene Ontology (GO) terms, KEGG and REACTOME pathways, and TRANSFAC motifs; g:Convert, for conversion between gene or protein names/IDs; g:Orth, for retrieving orthologs; and, g:Sorter, which searches for similar expression profiles. Functional analysis of SNPs and other DNA polymorphisms is also supported, as is enrichment analysis.

GEPASTool Content

http://www.gepas.org

The Gene Expression Pattern Analysis Suite (GEPAS) is a collection of tools for the analysis of microarray data. GEPAS includes tools for data pre-processing, clustering, differential gene expression, predictors, array CGH and functional annotation. A new pipeline module allows for automation of sequential analysis steps.

GVSTool Content

http://gvs.gs.washington.edu/GVS/index.jsp

Genome Variation Server (GVS) is a database that provides access to human genotype data found in dbSNP, and tools for the analysis of genotype data.

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HGVbaseDatabase Content

http://www.hgvbaseg2p.org/index

Human Genome Variation database - curated; attempt to summarize all known sequence variations in the human genome, to facilitate research into how genotypes affect common diseases, drug responses, and other complex phenotypes.

inGAP-svTool Content

http://ingap.sourceforge.net

inGAP-sv is a web server to identify and visualize structural variation from paired end mapping data. Several important features including local depth of coverage, mapping quality and associated tandem repeats are used to evaluate the quality of the predicted structural variation.

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International HapMap ProjectTool Content

http://www.nhgri.nih.gov/10001688

The haplotype map, or HapMap, is a tool that will allow researchers to find genes and genetic variations that affect health and disease.

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ISTECH SNPAnalyzerTool Content

http://snp.istech.info/istech/board/login_form.jsp

ISTECH SNPAnalyzer is a tool for the statistical analysis of SNP data that includes Hardy Weinberg equilibrium (HWE), haplotype estimation, linkage disequilibrium (LD), and QTL analyses. Registration required; some browser requirements and set-up necessary.

Tags associated with subcategory 'DNA/Sequence Polymorphisms'

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