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Workflows

Entries in this category contain links to bioinformatic workflows.

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BioExtractTool Content

http://www.bioextract.org

Computer Related > Web Services
Computer Related > Workflows
DNA > DNA and Genomic Analysis

The BioExtract Server is a platform for the creation of bioinformatic workflows to aid the analysis of genomic data. A series of recorded tasks can be saved and shared. Integrated resources include NCBI databases, EMBL-Bank, UniProt and UniRef, as well as a large number of computational tools such as EMBOSS and KEGG.

NAR Web Server Issue 2011
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tagsbiopolymers computational biology data mining database management systems factual databases information dissemination workflow

GalaxyTool Content

http://galaxyproject.org/

Computer Related > Workflows
DNA > DNA and Genomic Analysis

Galaxy is an open, web-based platform for performing accessible, reproducible, and transparent biomedical research. Complete computational analyses can be built, saved, rerun, modified and shared. Galaxy is available as a free public web server; as open-source software that can be installed and customized to address specific needs; as a virtual machine that can be installed on the cloud; and on many specialized public web servers at user sites.

This content is being maintained by galaxyproject.

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tagsalgorithms animals base sequence chromosome mapping cluster analysis computational biology data integration dna dna mutational analysis dna sequence analysis factual databases genetic databases genetic techniques genome genomics human genome humans molecular sequence data nucleic acid databases sequence alignment software design workflow

MemPypeTool Content

http://mu2py.biocomp.unibo.it/mempype

Computer Related > Workflows
Protein > Localization and Targeting

MemPype is a Python-based pipeline that integrates several tools for the prediction of topology and subcellular localization of Eukaryotic membrane proteins.

NAR Web Server Issue 2011
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MOWServTool Content

http://www.inab.org/MOWServ/

Computer Related > Databases
Computer Related > Web Services
Computer Related > Workflows

MOWServ provides integrated access to databases and analytical tools. Based on the BioMoby protocol for inter-service communication.

NAR Web Server Issue 2010
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tagscomputational biology phylogeny protein databases proteins systems integration

myExperimentResource Content

http://www.myexperiment.org

Computer Related > Workflows

myExperiment is an online research environment that supports the social sharing of bioinformatics workflows.

This content is being maintained by dder.

NAR Web Server Issue 2010
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tagscommunity networks computational biology information dissemination reproducibility of results

Pegasys: workflow management for bioinformaticsTool Content

http://www.bioextract.org/query/index.jsp

Computer Related > Workflows
DNA > Annotations
Human Genome > Annotations

Pegasys is a a flexible, modular and customizable software system that coordinates the execution of multiple biological sequence analysis tools and facilitates the integration of their output. The software allows users to create analysis workflows using a graphical user interface. Adaptors are included for various software tools.

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tagscomputational biology dna dna sequence analysis game theory genetic databases genetic heterogeneity humans programming languages sequence alignment software design

PRI-CATTool Content

http://www.ab.wur.nl/pricat

Computer Related > Workflows
Expression > Gene Regulation
Model Organisms > Plants

PRI-CAT is a web-based workflow tool for the management and analysis of plant ChIP-seq experiments, with focus on Arabidopsis. Secondary analysis can be performed with the aid of GALAXY.

This content is being maintained by jose.muino@wur.nl.

NAR Web Server Issue 2011
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tagsarabidopsis ChIP-seq plants transcription factors

TogoWSTool Content

http://togows.dbcls.jp/

Computer Related > Databases
Computer Related > Web Services
Computer Related > Workflows

TogoWS service provides solutions to web service incompatibilities such as interface and data type incompatibilities. TogoWS REST API and TogoWS SOAP API resolve these issues.

NAR Web Server Issue 2010
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tagscomputational biology factual databases systems integration

Tags associated with subcategory 'Computer Related/Workflows'

computational biology factual databases dna protein databases proteins phylogeny software design community networks transcription factors systems integration information dissemination humans programming languages sequence alignment genetic heterogeneity genetic databases reproducibility of results dna sequence analysis game theory plants ChIP-seq data integration dna mutational analysis genetic techniques cluster analysis chromosome mapping algorithms animals base sequence genome genomics database management systems workflow arabidopsis data mining biopolymers human genome molecular sequence data nucleic acid databases