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Web Services

This section has links to applications which have released Web Service API's.

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Found 18 links

Displaying 15 links

BIND SOAPTool Content

http://soap.bind.ca/

Computer Related > Web Services

BIND SOAP is a web service providing end users with the ability to access functionality offered by the BIND Search Service through a remote Application Programming Interface (API).

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tagsamino acid sequence animals macromolecular substances protein databases protein interaction mapping proteins sequence alignment tertiary protein structure

BioBIKETool Content

http://www.Biobike.org

Computer Related > Web Services

BioBIKE is a web-based environment enabling biologists with little programming expertise to combine tools, data and knowledge in novel and complex ways. BioBIKE is composed of three components: a biological knowledge base, a graphical programming interface and an extensible set of tools. Users may also invent their own tools.

NAR Web Server Issue 2009
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tagsbiology genetic databases systems integration

BioExtractTool Content

http://www.bioextract.org

Computer Related > Web Services
Computer Related > Workflows
DNA > DNA and Genomic Analysis

The BioExtract Server is a platform for the creation of bioinformatic workflows to aid the analysis of genomic data. A series of recorded tasks can be saved and shared. Integrated resources include NCBI databases, EMBL-Bank, UniProt and UniRef, as well as a large number of computational tools such as EMBOSS and KEGG.

NAR Web Server Issue 2011
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tagsbiopolymers computational biology data mining database management systems factual databases information dissemination workflow

caBIO Web ServicesResource Content

http://cabio.nci.nih.gov/NCICB/infrastructure/cacore_overview/caBIO

Computer Related > Web Services

SOAP interfaces used to access the cancer Bioinformatics Infrastructure Objects(caBIO) funtionality.

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ChinookTool Content

http://www.bcgsc.bc.ca/chinook/

Computer Related > Web Services
DNA > DNA and Genomic Analysis
DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Sequence Comparison > Multiple Sequence Alignments
Sequence Comparison > Pairwise Sequence Alignments

Chinook is a peer-to-peer (P2P) service for the discovery, use and assessment of bioinformatics programs. Chinook Online allows researchers to connect and run distributed bioinformatics programs using a web application.

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tagsbenchmarking biomedical technology assessment computational biology computing methodologies software validation

EBI ToolsTool Content

http://www.ebi.ac.uk/Tools/webservices/

Computer Related > Web Services
DNA > Sequence Retrieval and Submission
Education > Directories and Portals
Literature > Search Tools
Protein > 3-D Structure Comparison
Protein > Domains and Motifs
Protein > Sequence Retrieval
RNA > Sequence Retrieval
Sequence Comparison > Multiple Sequence Alignments
Sequence Comparison > Similarity Searching

EBI Tools is a project that aims to provide programmatic access to the various databases and retrieval and analysis services that the European Bioinformatics Institute (EBI) provides through Simple Object Access Protocol (SOAP) and other related web service technologies.

NAR Web Server Issue 2005NAR Web Server Issue 2007NAR Web Server Issue 2009
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tagsbibliographic databases biotechnology computational biology europe genetic databases nucleic acids protein sequence analysis proteins sequence alignment sequence analysis sequence homology systems integration

EMBRACE Web ServiceResource Content

http://www.embraceregistry.net

Computer Related > Web Services

European Model for Bioinformatics Research and Community Education (EMBRACE) web service consists of EDAM, an ontology for describing life sciences; BioXSD, a schema for exchanging data between services and a centralized registry of ~1000 services.

NAR Web Server Issue 2010
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tagsbiological science disciplines computational biology information dissemination registries systems integration

Gene3DTool Content

http://gene3d.biochem.ucl.ac.uk/WebServices/

Computer Related > Web Services
Protein > 3-D Structural Features
Protein > Annotation and Function
Protein > Domains and Motifs

The Gene3D web services provide programmatic access to the CATH-Gene3D annotation resources and in-house software tools. These services include Gene3DScan for identifying structural domains within protein sequences, access to pre-calculated annotations for the major sequence databases, and linked functional annotation from UniProt, GO and KEGG.

This content is being maintained by corinyeats.

NAR Web Server Issue 2011
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GeneCodisTool Content

http://genecodis.dacya.ucm.es

Computer Related > Web Services
DNA > Annotations
Expression > Gene Set Analysis
Expression > Networks

Originally designed in 2007 for modular enrichment analysis, GeneCodis assists in functional analysis of gene lists, integrating information from different sources. GeneCodis also finds regulatory patterns, and singular and modular patterns of interrelated annotations.

NAR Web Server Issue 2009
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tagsanimals cattle gene expression regulation genes humans mice micrornas rats systems integration transcription factors

IBWS: IST Bioinformatics Web ServicesResource Content

http://bioinformatics.istge.it/ibws/

Computer Related > Web Services

The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa compiled a suite of free web services IBWS.

This content is being maintained by PaoloRomano.

NAR Web Server Issue 2010
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tagsbiological specimen banks catalogs as topic computational biology factual databases mutation nucleic acid databases p53 genes

MOWServTool Content

http://www.inab.org/MOWServ/

Computer Related > Databases
Computer Related > Web Services
Computer Related > Workflows

MOWServ provides integrated access to databases and analytical tools. Based on the BioMoby protocol for inter-service communication.

NAR Web Server Issue 2010
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tagscomputational biology phylogeny protein databases proteins systems integration

Opal Web Services for Biomedical ApplicationsTool Content

http://ws.nbcr.net

Computer Related > Web Services

Opal Web Services for Biomedical Applications is a production web server. Powered by Opal, it allows users to use scientific applications easily as web services without any modification to the scientific codes.

NAR Web Server Issue 2010
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tagsbiomedical research computational biology database management systems

SMAP-WSTool Content

http://kryptonite.ucsd.edu/opal2/GetServicesList.do

Computer Related > Web Services
Protein > 3-D Structural Features
Protein > 3-D Structure Comparison
Protein > Proteomics

The SMAP web service provides a user friendly interface and programming API to study protein-ligand interactions. Useful for understanding the structure, function and evolution of proteins and for designing safe therapeutics.

NAR Web Server Issue 2010
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tagsalgorithms binding sites drug discovery ligands protein conformation protein structural homology proteome

TavernaTool Content

http://taverna.sourceforge.net/

Computer Related > Web Services
DNA > Annotations
DNA > Gene Prediction
Human Genome > Annotations
Protein > Interactions, Pathways, Enzymes
Sequence Comparison > Similarity Searching

Taverna is a tool for creating and running bioinformatics workflows.

NAR Web Server Issue 2006
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tagscomputational biology database management systems genetic databases genomics online systems sequence analysis software design systems integration
setsUniversity of Manchester

TogoWSTool Content

http://togows.dbcls.jp/

Computer Related > Databases
Computer Related > Web Services
Computer Related > Workflows

TogoWS service provides solutions to web service incompatibilities such as interface and data type incompatibilities. TogoWS REST API and TogoWS SOAP API resolve these issues.

NAR Web Server Issue 2010
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tagscomputational biology factual databases systems integration

Tags associated with subcategory 'Computer Related/Web Services'

computational biology systems integration factual databases genes gene expression regulation computing methodologies software validation cooperative behavior genetic databases humans mice micrornas transcription factors rats nucleic acids tertiary protein structure macromolecular substances protein databases protein interaction mapping sequence alignment proteins animals University of Manchester sequence homology protein sequence analysis genomics online systems software design sequence analysis registries information dissemination bibliographic databases biotechnology europe catalogs as topic biological specimen banks biology biomedical technology assessment data mining biopolymers workflow algorithms benchmarking cattle biological science disciplines amino acid sequence molecular models protein conformation mutation p53 genes nucleic acid databases proteome protein structural homology database management systems biomedical research phylogeny binding sites ligands drug discovery