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Math and Statistics

Links to resources for the statistical analysis of bioinformatics data including protein sequences and expression analysis. Also contains mathematical models and other math related resources.

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Found 8 links

Displaying 8 links

BioconductorTool Content

http://www.bioconductor.org/

Computer Related > Bio-* Programming Tools
Computer Related > Math and Statistics
Expression > Transcript Expression Analysis

Bioconductor is an open source and open development software project that aims to provide access to a wide range of powerful statistical and graphical methods for the analysis of genomic data.

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tagsalgorithms biological models computational biology computer simulation database management systems dna probes dna sequence analysis gene expression profiling gene expression regulation information dissemination nucleic acid sequence homology oligonucleotide array sequence analysis reproducibility of results sequence alignment signal transduction transcription factors

EVATool Content

http://cubic.bioc.columbia.edu/eva/

Computer Related > Math and Statistics
Protein > 2-D Structure Prediction
Protein > 3-D Structure Prediction

EValuation of Automatic protein structure prediction; provides a continuous, automated, statistical analysis of structure prediction servers.

NAR Web Server Issue 2003
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tagsautomation protein conformation protein databases protein folding protein sequence analysis protein structural homology proteins reproducibility of results secondary protein structure sequence alignment

EVAconTool Content

http://www.pdg.cnb.uam.es/eva/con/index.html

Computer Related > Math and Statistics
Protein > 3-D Structural Features

EVAcon automates the continuous evaluation of inter-residue contact prediction servers. Results can be viewed statically or dynamically generated.

NAR Web Server Issue 2005
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tagsamino acids molecular models protein conformation reproducibility of results

RTool Content

http://www.r-project.org/

Computer Related > Bio-* Programming Tools
Computer Related > Math and Statistics

System for statistical computation and graphics; an interpreted computer language which allows branching and looping as well as modular programming using functions.

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SAPS - Statistical Analysis of Protein SequencesTool Content

http://www.ebi.ac.uk/Tools/saps/

Computer Related > Math and Statistics
Protein > 2-D Structure Prediction
Protein > Localization and Targeting

Calculations include compositional analysis, charge distribution, identification of highly hydrophobic (transmembrane) segments, sequence repeats, and more.

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tagsalgorithms amino acid sequence animals drosophila humans molecular sequence data nucleic acid sequence homology proteins proto-oncogene proteins c-myc

Statistics Notes in the British Medical JournalResource Content

http://www.jerrydallal.com/LHSP/bmj.htm

Computer Related > Math and Statistics

Brief descriptions of statistical concepts and methods often combined with clinical/medical examples.

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Statistics.comResource Content

http://www.statistics.com/

Computer Related > Math and Statistics

Online statistics courses. Also contains links to statistics software and on-line textbooks.

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UCLA Statistical Computing PortalTool Content

http://statcomp.ats.ucla.edu/

Computer Related > Math and Statistics

The Stat Computing Portal is a single search engine that allows you to search over 20,000 pages on statistical computing. The Stat Computing Portal is broken up into smaller portals focused on these statistical packages -- SAS, Stata, SPSS, SUDAAN, WesVar, HLM, MLwiN, S-Plus/R, Limdep, and Mplus.

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Tags associated with subcategory 'Computer Related/Math and Statistics'

proteins reproducibility of results animals algorithms sequence alignment nucleic acid sequence homology protein conformation protein sequence analysis protein databases humans computational biology kinetic models oligonucleotide array sequence analysis information dissemination signal transduction gene expression profiling gene expression regulation transcription factors molecular models biological models secondary protein structure protein structural homology computer simulation amino acids protein folding dna sequence analysis dna probes mice proteome bacterial proteins archaeal proteins systems biology amino acid sequence homology statistical data interpretation sbml proto-oncogene proteins c-myc database management systems molecular sequence data automation amino acid sequence quantitative models drosophila