The Bioinformatics Links Directory features curated links to molecular resources, tools and databases. The links listed in this directory are selected on the basis of recommendations from bioinformatics experts in the field. We also rely on input from our community of bioinformatics users for suggestions. Starting in 2003, we have also started listing all links contained in the NAR Webserver issue.
- Computer Related(64)
- Bio-* Programming Tools
- C/C++
- Databases
- Java
- Linux/Unix
- PERL
- PHP
- Statistics
- Web Development
- Web Services
- DNA(488)
- Annotations
- Gene Prediction
- Mapping and Assembly
- Phylogeny Reconstruction
- Sequence Polymorphisms
- Sequence Retrieval and Submission
- Structure and Sequence Feature Detection
- Tools For the Bench
- Utilities
- Education(70)
- Bioinformatics Related News Sources
- Community
- Courses, Programs and Workshops
- Directories and Portals
- General
- Tutorials and Directed Learning Resources
- Expression(358)
- cDNA, EST, SAGE
- Gene Regulation
- Gene Set Analysis
- Networks
- Protein Expression
- Splicing
- Transcript Expression & Microarrays
- Human Genome(160) This section contains links to draft annotations of the human genome in addition to resources for sequence polymorphisms and genomics. Also included are links related to ethical discussions surrounding the study of the human genome.
- Literature(52) Links to resources related to published literature, including tools to search for articles and through literature abstracts. Additional text mining resources, open access resources, and literature goldmines are also listed.
- Model Organisms(236)
- Fish
- Fly
- General Resources
- Microbes
- Mouse and Rat
- Other Organisms
- Other Vertebrates
- Plants
- Worm
- Yeast
- Other Molecules(31) Bioinformatics tools related to molecules other than DNA, RNA, and protein. This category will include resources for the bioinformatics of small molecules as well as for other biopolymers including carbohydrates and metabolites.
- Protein(970)
- 2-D Structure Prediction
- 3-D Structural Features
- 3-D Structure Comparison
- 3-D Structure Prediction
- 3-D Structure Retrieval, Viewing
- Annotation and Function
- Biochemical Features
- Do-it-all Tools for Protein
- Domains and Motifs
- Interactions, Pathways, Enzymes
- Localization and Targeting
- Molecular Dynamics and Docking
- Phylogeny Reconstruction
- Presentation and Format
- Protein Expression
- Proteomics
- Sequence Comparison
- Sequence Data
- Sequence Features
- Sequence Retrieval
- RNA(134)
- Functional RNAs
- General Resources
- Motifs
- Sequence Retrieval
- Structure Prediction, Visualization, and Design
- Sequence Comparison(275)
- Alignment Editing and Visualization
- Analysis of Aligned Sequences
- Comparative Genomics
- Multiple Sequence Alignments
- Other Alignment Tools
- Pairwise Sequence Alignments
- Similarity Searching
